This will be a discussion of the paper https://arxiv.org/abs/1607.06978.
Past Junior Computational Algebra and Topology Seminar
This will be a discussion of the paper https://arxiv.org/abs/1604.02618
This will be a quick introduction to tropical algebra and the main results from the paper https://arxiv.org/pdf/1604.00113.pdf
Finding implementable descriptions of the possible configurations of a knotted DNA molecule has remarkable importance from a biological point of view, and it is a hard and well studied problem in mathematics.
Here we present two newly developed mathematical tools that describe the configuration space of knots and model the action of Type I and II Topoisomerases on a covalently closed circular DNA molecule: the Reidemeister graphs.
We determine some local and global properties of these graphs and prove that in one case the graph-isomorphism type is a complete knot invariant up to mirroring.
Finally, we indicate how the Reidemeister graphs can be used to infer information about the proteins' action.
In this talk I will first briefly introduce 1-parameter persistent homology, and discuss some applications and the theoretical challenges in the multiparameter case. If time remains I will explain how tools from commutative algebra give invariants suitable for the study of data. This last part is based on the preprint https://arxiv.org/abs/1708.07390.