OCCAM Pre Prints and Publications
This is the list of all OCCAM Papers to date in reverse chronological order. For more information or to request a copy please contact occam-admin [-at-] maths [dot] ox [dot] ac [dot] uk.
To go directly to preprints from a previous year please use these links: 2009, 2010, 2011
Note that the articles below are the submitted manuscripts. For final versions please follow the link to the corresponding journal webpage.
2012 Pre Prints and Publications
[12/19]
März T., Macdonald C.: Calculus on surfaces with general closest
point functions:
[12/18]
Moore M. R., Howison S. D.,
Ockendon J. R., Oliver J. M.: A note on
oblique water entry:
[12/17]
Yavari A., Goriely A.: Weyl geometry and the nonlinear mechanics of
distributed point defects:
[12/16]
Cotter S. L., Robers G. O.,
Stuart A. M., White D.: MCMC methods for
functions: modifying old algorithms to make them faster:
[12/15]
Lewis M. A., Li B.: Spreading speed, travelling waves, and
minimal domain size in impulsive reaction-diffusion models:
[12/14]
Potapov A., Merrill E., Lewis
M. A.: Wildlife disease elimination and density dependence:
[12/13]
Fortin M.-J., Peres-Neto P.,
Lewis M. A.: Putting space back into
spatial ecology:
[12/12]
Wheeler J. D., Bampfylde C.
J., Lewis M. A.: Modelling
temperature-dependent larval development and subsequent demographic allee
effects in adult populations of the alpine butterfly Parnassius smintheus:
[12/11]
Krkošek M., Ashander J., Lewis
M. A.: Parasite spill-back from domestic
hosts may induce an Allee effect in wildlife hosts:
[12/10]
Krkošek M., Connors B. M.,
Lewis M. A., Poulin R.: Allee effects may
slow the spread of parasites in a coastal marine ecosystem:
[12/09]
Jain H. V., Moldovan N. I.,
Byrne H. M.: Modeling stem/progenitor
cell-induced neovascularization and oxygenation around solid implants:
[12/08]
Jain H. V., Byrne H. M.: Qualitative analysis of an
integro-differential equation model of periodic chemotherapy:
[12/07]
Griffiths I. M., Stone H. A.: Axial dispersion via shear-enhanced
diffusion in colloidal suspensions:
[12/06]
Woolley T. E., Baker R. E., Gaffney E. A., Maini P. K., Seirin-Lee
S.: Effects of intrinsic stochasticity on
delayed reaction-diffusion patterning systems:
[12/05]
Davit Y., Byrne H., Osborne
J., Pitt-Francis J., Gavaghan D., Quintard M.: Solute transport within porous biofilms: diffusion or dispersion?:
[12/04]
Iyer G., Zygalakis K. C.: Numerical studies of homogenization under a
fast cellular flow:
[12/03]
Prior C. B., Goriely A.:
The Fourier
transform of tubular densities:
[12/02]
McKenzie H. W., Merrill E. H.,
Spiteri R. J., Lewis M. A.: How linear features alter predator movement and the
functional response: Journal of the Royal Society Interface Focus
[12/01]
Moulton D. E., Goriely A., Chirat R.: Mechanical growth and morphogenesis of seashells:
2011 Pre Prints and Publications
[11/73]
Bressloff P. C., Newby J. M.:
Filling of
a Poisson trap by a population of random intermittent searchers:
[11/72]
Henao D., Majumdar A.: Symmetry of uniaxial global Landau-de Gennes
minimizers in the theory of nematic liquid crystals:
[11/71]
Gallimore L. S., Whiteley J. P., Waters S. L., King J. R., Oliver J. M.: Non–uniqueness in a minimal model for cell
motility:
[11/70]
Cooray H., Cicuta P., Vella D.: The capillary interaction between two vertical cylinders:
[11/69]
Giomi L., Bowick M. J., Ma X., Majumdar A.: Molecular tilt on monolayer-protected
nanoparticles:
[11/68]
Davit Y., Quintard M.: Comment on “Frequency-dependent dispersion
in porous media”:
[11/67]
Please C. P., Fulford G. R.,
McElwain D. L. S., Collins M. J.: Tear
film thickness variations and the role of the tear meniscus:
[11/66]
Prior C., Berger M. A.: On the shape of force-free field lines in
the solar corona:
[11/65]
Cotter S. L., Vejchodský T.,
Erban R.: Adaptive finite element method assisted by stochastic simulation of
chemical systems:
[11/64]
Majumdar A., Prior C., Goriely
A.: Stability estimates for a twisted rod under terminal loads a three-dimensional study:
[11/63]
Bressloff P. C., Webber M.: Front
propagation in stochastic neural fields:
[11/62]
Bressloff P. C., Webber M.: Neural field model of binocular rivalry
waves:
[11/61]
Richardson G., Please C. P.,
Kirkpatrick J.: Asymptotic solution of a
model for bilayer organic diodes and solar cells:
[11/60]
Cotter C. J., Cotter S. L., Vialard F. X.: Bayesian data assimilation in shape
registration:
[11/59]
Goriely A., Neukirch S., Hausrath A.: Helices through 3 or 4 points?:
[11/58]
Yavari A., Goriely A.: Riemann-Cartan Geometry of nonlinear dislocation mechanics:
[11/57]
Newby, J. M.: Isolating
intrinsic noise sources in a stochastic genetic switch:
[11/56]
Auer S., Macdonald C. B., Treib M., Schneider J., Westermann R.: Real-time fluid effects on surfaces using the Closest Point Method
[11/55]
Luo C., Majumdar A., Erban R.: The dynamics of bistable liquid crystal wells
[11/54]
Hennessy M. G., Münch A.: A multiple scales approach to evaporation induced Marangoni convection:
[11/53]
Moulton D. E., Goriely A.: Surface
growth kinematics via local curve evolution:
[11/52]
März T.: Image inpainting based on
coherence transport with adapted distance functions: SIAM Journal on Imaging Sciences
[11/51]
Du Q., Gunzburger M., Lehoucq
R. B., Zhou K.: A nonlocal vector calculus, nonlocal volume-constrained
problems, and nonlocal balance laws:
[11/50]
Flegg J. A., Byrne H. M.,
Flegg M. B., McElwain D. L. S.: Wound healing angiogenesis: the clinical
implications of a simple mathematical model:
[11/49]
Style R., Peppin S. S. L.: The
kinetics of ice-lens growth in porous media:
[11/48]
Abdulle A., Cohen D., Vilmart
G., Zygalakis K. C.: High order weak methods for stochastic differential
equations based on modified equations:
[11/47]
Lai Y. M., Newby J., Bressloff
P. C.: Effects of demographic noise on the synchronization of a
metapopulation in a fluctuating environment: Physical Review Letters
[11/46]
Murphy K. E., Hall C. L.,
Maini P. K., McCue S. W., McElwain D. L. S.: A two-compartment mechanochemical model of
the roles of transforming growth factor β and tissue tension in dermal wound
healing: Journal of Theoretical Biology
[11/45]
Murphy K. E., Hall C. L.,
Maini P. K., McCue S. W., McElwain D. L. S.: A fibrocontractive
mechanochemical model of dermal wound closure incorporating realistic growth
factor kinetics:
[11/44]
Davidovitch B., Schroll R. D.,
Vella D., Adda-Bedia M., Cerda E.: A prototypical model for tensional
wrinkling in thin sheets: Proceeding of the National Academy of Sciences of the USA
[11/43]
Zubkov V. S., Breward C. J.
B., Gaffney E. A.: Coupling fluid and solute dynamics within the ocular
surface tear film a modelling study of black line osmolarity:
[11/42]
Burrage K., Hale N., Kay D.: An efficient implementation
of an implicit fem scheme for fractional-in-space reaction-diffusion equations:
[11/41]
Smith N. A. S., Peppin S. S.
L., Ramos A. M.: On the modelling and simulation of a high pressure shift
freezing process:
[11/40]
Székely Jr. T., Burrage K.,
Erban R., Zygalakis K. C.: Higher-order numerical methods for stochastic
simulation of chemical reaction systems:
[11/39]
Griffiths I. M., Bain C. D.,
Breward C. J. W., Chapman S. J., Howell P. D., Waters S. L.: An asymptotic theory for
the re-equilibration of a micellar surfactant solution:
[11/38]
Style R. W., Cocks A. C. F.,
Peppin S. S. L., Wettlaufer J. S.: Ice-lens formation and
confinement-induced supercooling in soils and other colloidal materials: Physical Review E
[11/37]
Neukirch S., Frelat J.,
Goriely A., Maurinia C.: Frequency jumps in the planar vibrations of an
elastic beam: Journal of Sound and Vibration
[11/36]
Zygalakis K. C., Roose T.: A
simple mathematical model for investigating the effect of cluster roots on
plant nutrient uptake:
[11/35]
Curtis M. P., Kirkman-Brown J.
C., Connolly T. J., Gaffney E. A.: Modelling a tethered mammalian sperm cell
undergoing hyperactivation:
[11/34]
Luo X., Hoteit I., Duan L.,
Wang W.: Review of nonlinear Kalman, ensemble and particle filtering with
application to the reservoir history matching problem: Nonlinear Estimation and Applications to
Industrial Systems Control (Book)
[11/33]
Duan L., Farmer C., Hoteit I.,
Luo X., Moroz I.: Data assimilation using bayesian filters and B-spline
geological models: Institute
of Physics: Conference Series
[11/32]
Vella D., Ajdari A., Vaziri
A., Boudaoud A.: Wrinkling of pressurized elastic shells: Physical Review Letters
[11/31]
Vella D., Ajdari A., Vaziri
A., Boudaoud A.: The indentation of pressurized elastic shells: From
polymeric capsules to yeast cells:
Journal of the Royal Society Interface
[11/30]
Luo C., Calderer M. C.: Numerical
study of liquid crystal elastomers by a mixed finite element method: European Journal of Applied Mathematics
[11/29]
Wagner
T. J. W., Vella D.: Floating carpets and the delamination of elastic sheets:
Physical Review Letters
[11/28]
Loessner D., Flegg J., Byrne
H., Hall C., Moroney T., Clements J., McElwain D., Hutmacher D.: Growth of confined cancer spheroids: a
combined experimental and mathematical modelling approach: (OCCAM Technical Report)
[11/27]
Elliott J. A. W., Peppin S. S.
L.: Particle trapping and banding in
rapid colloidal solidification: Physical
Review Letters
[11/26]
Burlakov V. M., Emptage N., Goriely A.,
Bressloff P. C.: Synaptic bistability due to
nucleation and evaporation of receptor clusters: Physical Review Letters
[11/25]
Quezada de Luna M., Đuričković B., Goriely A.: Nonlinear waves in heterogeneous
elastic rods via homogenization: International Journal of Nonlinear
Mechanics
[11/24]
Hall C., Markenscoff X.: On approaches to
modelling lattice dislocations: (OCCAM Technical Report)
[11/23]
Mihai L. A., Goriely A.: Positive or negative Poynting effect? The role of adscititious inequalities in
hyperelastic materials: Proceedings of the Royal Society
[11/22]
Menon S. N., Hall C. L., McCue S. W., McElwain D. L. S.: A novel model for one-dimensional
morphoelasticity. Part II - Application to the contraction of
fibroblast-populated collagen lattices: (OCCAM Technical Report)
[11/21]
Hall C. L., Menon S. N., McCue S. W., McElwain D. L. S.: A novel model for one-dimensional
morphoelasticity. Part I - Theoretical foundations: (OCCAM Technical Report)
[11/20]
Franz B., Erban R.: Hybrid modelling of individual movement and collective
behaviour: Dispersal, individual movement and spatial ecology: A
mathematical perspective (book chapter)
[11/19]
Keener J. P., Newby J. M.: A perturbation analysis of spontaneous action potential
initiation by stochastic ion channels: Physical Review E
[11/18]
Hall C. L.: Asymptotic analysis of a pile-up of edge dislocation: Materials Science and Engineering A
[11/17]
Soon Y. W., Clarke T. M., Zhang W., Agostinelli T., Kirkpatrick J., Dyer-Smith C., McCulloch I., Nelson J., Durrant J. R.: Energy versus electron transfer in organic solar cells: a
comparison of the photophysics of two indenofluorene: fullerene blend films: Chemical
Science
[11/16]
Kirchartz T., Pieters B. E., Kirkpatrick J., Rau U., Nelson J.: Recombination via tail states
in polythiophene:fullerene solar cells: Physical Review B
[11/15]
Flegg M. B., Chapman S. J., Erban R.: The Two Regime method for optimizing stochastic
reaction-diffusion simulations:
[11/14]
Cotter S. L., Zygalakis K. C., Kevrekidis I. G., Erban R.: A constrained approach
to multiscale stochastic simulation of chemically reacting systems: Journal of Chemical
Physics
[11/13]
Bressloff P. C., Newby J. M.: Quasi-steady state analysis of two-dimensional random
intermittent search processes: Physical Review E
[11/12]
Klika V., Baker R. E., Headon D., Gaffney E. A.: The influence of receptor-mediated
interactions on reaction-diffusion mechanisms of cellular self-organisation:
[11/11]
Braun R. J.: Dynamics of the tear film: Annual Review of Fluid Mechanics
[11/10]
Griffiths I. M., Bain C. D., Breward C. J. W., Colegate D. M., Howell P. D., Waters S. L.: On the predictions and
limitations of the Becker–Doring model for reaction kinetics in micellar
surfactant solutions: Journal of Colloid and Interface Science
[11/09]
McNamara H., Bower G., Dellar P. J.: A locally adaptive time-stepping algorithm for
petroleum reservoir simulations:
[11/08]
Cross R., McNamara H., Kalachev L., Pokrovskii A.: Hysteresis
and Post Walrasian Economics:
[11/07]
Ketcheson D. I., Gottlieb S., Macdonald C. B.: Strong stability preserving Two-Step
Runge-Kutta Methods: SIAM Journal on Numerical Analysis
[11/06]
Fornberg B., Weideman J. A. C.: A Numerical Methodology for the Painlevé Equations: Journal of
Computational Physics
[11/05]
Macdonald C., Brandman J., Ruuth S. J.: Solving
Eigenvalue Problems on Curved Surfaces: Journal of Computational Physics
[11/04]
Erban R., Haskovec, J.: From individual to
collective behaviour of coupled velocity jump processes - a locust example:
[11/03]
Goriely A., Tabor M.: Spontaneous
rotational inversion in Phycomyces: Physical Review Letters
[10/02]
Epstein M., Goriely A.: Self-diffusion in remodelling and growth: Zeitschrift für
angewandte Mathematik und Physik
[11/01]
Lippok N., Nielsen P., Vanholsbeeck F.: Fluctuations
and instability in sedimentation: Optics
Express
2010 Pre Prints and Publications
[10/66]
Spannuth M.,
Mochrie S. G. J., Peppin S. S. L., Wettlaufer J. S.: Dynamics of colloidal particles in ice: Journal of Chemical Physics
[10/65]
Bruna M., Chapman S. J.: Excluded-volume effects in the diffusion of hard
spheres: Physical Review Letters
[10/64]
Kirkpatrick, J.: Hot Charge Pairs and Charge Generation in Donor
Acceptor Blends: (OCCAM Technical Report)
[10/63]
Zygalakis K. C., Kirk G. J. D., Jones D. L., Wissuwa
M., Roose T.: A dual porosity model of nutrient uptake by root hairs: New Phytologist
[10/62]
Oburger E., Leitner D., Jones D. L., Zygalakis K.
C., Schnepf A., Roose T.: Adsorption and desorption dynamics of citric acid
anions in soil: European Journal of Soil Science
[10/61]
Bressloff P.: Metastable states and quasicycles in a stochastic
Wilson-Cowan model of neuronal population dynamics: Physical Review E
[10/60]
Bressloff P., Lai Y. M.: Stochastic synchronization of neuronal populations with
intrinsic and extrinsic noise: Journal Mathematical Neuroscience
[10/59]
Münch A., Please C. P., Wagner B.: Spin coating of an evaporating polymer solution: Physics of Fluids
[10/58]
Spannuth M., Mochrie S. G. J., Peppin S. S. L.,
Wettlaufer J. S.: Particle-scale structure in frozen colloidal
suspensions from small angle X-ray scattering: Physical Review E.
[10/57]
Pathmanathan P., Bernabeu M. O., Bordas R., Cooper
J., Garny A., Pitt-Francis J. M., Whiteley J. P., Gavaghan D. J.: A numerical guide to the solution of the bidomain
equations of cardiac electrophysiology: Progress in Biophysics and Molecular Biology
[10/56]
Osborne J. M., O'Dea R. D., Whiteley J. P., Byrne H.
M., Waters S. L.: The Influence of Bioreactor Geometry and the Mechanical
Environment on Engineered Tissues: ASME Journal of Biomechanical Engineering
[10/55]
Destrade M., Goriely A., Saccomandi G.: Scalar evolution equations for shear waves in
incompressible solids: A simple derivation of the Z, ZK, KZK, and KP equations: Proceedings of the Royal Society A
[10/54]
Loessner D., Flegg J. A., Byrne H. M. Hall C. L.,
Moroney T. J., Clements J. A., Hutmacher D. W., McElwain D. L. S.: Modeling the growth of multicellular cancer spheroids
in a bioengineered 3D microenvironment and their treatment with an anti-cancer
drug: (OCCAM Technical Report)
[10/53]
Majumdar A.: Liquid Crystal Theory and Modelling: Discussion Meeting: Liquid Crystals Today
[10/52]
Majumdar A.: Order parameters in the Landau-de Gennes theory - the
static and dynamic scenarios: Liquid Crystals
[10/51]
Klingbeil G., Erban R., Giles M., Maini P. K.: STOCHSIMGPU: Parallel stochastic simulation for the
Systems Biology Toolbox 2 for MATLAB: Bioinformatics
[10/50]
Flynn C., Rubin M. B., Nielsen P.: A model for the anisotropic response of fibrous soft
tissues using six discrete fibre bundles: International Journal for Numerical Methods in Biomedical Engineering
[10/49]
Cotter S. L., Dashti M., Robinson J. C., Stuart A. M.: Variational Data Assimilation Using Targetted Random
Walks: International Journal for Numerical Methods in Fluids
[10/48]
Moulton D. E., Goriely A.: Possible role of differential growth in airway wall
remodeling in asthma: Journal of Applied Physiology
[10/47]
Stoll M., Wathen A.: All-at-once solution
of time-dependent PDE-constrained optimization problems:
[10/46]
Bressloff P. C., Oster A. M.: A theory for the
alignment of cortical feature maps during development: Physical Review E
[10/45]
Kilpatrick Z. P., Bressloff P. C.: Binocular Rivalry in
a Competitive Neural Network with Synaptic Depression: SIAM Applied Dynamical Systems
[10/44]
Style R. W., Peppin S. S. L., Cocks A. C. F.: Mud peeling and
horizontal crack formation in drying clays: Journal of Geophysical Research: Earth Surface
[10/43]
Chapman S. J., Lottes J., Trefethen L. N.: Four Bugs on a
Rectangle: Proceedings of the Royal Society A
[10/42]
Motamed M., Macdonald C. B., Ruuth S. J.: On the Linear
Stability of the Fifth-Order WENO Discretization: Journal of Scientific Computing
[10/41]
Goswami D., Pani A. K., Yadav S.: Optimal Error Estimates
of a Mixed Finite Element Method for Parabolic Integro-Differential Equations
with Non Smooth Initial Data:
[10/40]
McKibbin R., Hale N., Style R., Walters N.: Convection and heat
transfer in layered sloping warm-water aquifers: Journal of Porous Media
[10/39]
Newby J., Bressloff P. C.: Local synaptic
signaling enhances the stochastic transport of motor-driven cargo in neurons: Physical Biology
[10/38]
Stoll M., Wathen A.: Preconditioners for
state constrained optimal control problems with Moreau-Yosida penalty function:
[10/37]
Moulton D. E., Goriely A.: Circumferential
buckling instability of a growing cylindrical tube: Journal of the Mechanics and Physics of Solids
[10/36]
Duan L., Farmer C. L., Moroz I. M.: Sequential Inverse
Problems Bayesian Principles and the Logistic Map Example: 8th International Conference of Numerical Analysis and Applied Mathematics 2010
[10/35]
Duan L., Farmer C. L., Moroz I. M.: Regularized
Particle Filter with Langevin Resampling Step: 8th International Conference of Numerical Analysis and Applied Mathematics 2010
[10/34]
Reis T., Dellar P.: A random projection
method for sharp phase boundaries in lattice Boltzmann simulations: Proceedings of the 12th European Conference for the Mathematics of Oil Recovery
[10/33]
Whiteley J. P., Gillow K., Tavener S. J., Walter A. C.: Error bounds on block
Gauss–Seidel solutions of coupled multiphysics problems: International Journal for Numerical Methods in Engineering
[10/32]
Gadêlha H., Gaffney E. A., Smith D. J., Kirkman-Brown J. C.: Nonlinear instability
in flagellar dynamics: a novel modulation mechanism in sperm migration?: Journal of the Royal Society Interface
[10/31]
Majumdar A.: The Radial-Hedgehog
Solution in Landau-de Gennes' theory: European Journal of Applied Mathematics
[10/30]
Majumdar A.: The Landau-de Gennes
theory of nematic liquid crystals: Uniaxiality versus Biaxiality: Communications in Pure and Applied Analysis
[10/29]
Goswami D., Pani A. K.: A Priori Error
Estimates for Semidiscrete Finite Element Approximations to Equations of Motion
Arising in Oldroyd Fluids of Order One: International Journal of Numerical Analysis and Modeling
[10/28]
Memon S., Nataraj N., Pani A. K.: An a posteriori error
analysis of a mixed finite element Galerkin approximation to second order
linear parabolic problems:
[10/27]
Benilov E. S., Chapman S. J., Mcleod J. B., Ockendon J. R., Zubkov V. S.: On Liquid Films on an
Inclined Plate: Journal of Fluid Mechanics
[10/26]
Ellis A. S., Fowler A. C.: On an evolution
equation for sand dunes:
[10/25]
Blank L., Sarbu L., Stoll M.: Preconditioning
for Allen-Cahn Variational Inequalities with Non-Local Constraints:
[10/24]
Hall C. L., Band L. R., Richardson G., Jensen O. E., Siggers J. H., Foss: Intracellular Flow
in Optic Nerve Axons: A Mechanism for Cell Death in Glaucoma: Conference presentation for EUROMECH 2010
[10/23]
Hall C. L., Chapman S. J., Ockendon J. R.: Asymptotic analysis of a system of
algebraic equations arising in dislocation theory: SIAM Journal of Applied Mathematics
[10/22]
Klingbeil G., Erban R., Giles M., Maini P. K.: Fat vs. thin threading approach on GPUs application to stochastic simulation
of chemical reactions: IEEE Transactions on Parallel & Distributed Systems
[10/21]
Pathmanathan P., Chapman S. J., Gavaghan D. J., Whiteley J. P.: Cardiac Electromechanics The Effect of Contraction Model on the Mathematical
Problem and Accuracy of the Numerical Scheme: Quaterly Journal of Mechanics and Applied Mathematics
[10/20]
Hall C. L.: Asymptotic expressions for the nearest and furthest dislocations in a
pile-up against a grain boundary: The Philosophical Magazine
[10/19]
Goriely A., Moulton D. E., Vandiver R.: Elastic cavitation, tube hollowing, and differential growth in plants and
biological tissues: EuroPhysics Letters
[10/18]
Robertson-Tessi, M., El-Kareh A., Goriely A.: A Mathematical Model of Tumor-Immune Interactions: Journal of Theoretical Biology
[10/17]
Style R. W., Peppin S. S. L.: Crust formation in drying colloidal suspensions: Proceedings of the Royal Society A
[10/16]
Goriely A., Moulton D. E.: The Physics and Mechanics of Biological Systems: Lecture Notes of the Les Houches Summer Schools (Book Chapter)
[10/15]
Xue C., Hwang H. J., Painter K. J., Erban R.: Travelling waves in hyperbolic chemotaxis equations: Bulletin of Mathematical Biology
[10/14]
Lipkovà J., Zygalakis K. C., Chapman, S. J., Erban R.: Analysis of Brownian Dynamics Simulations of Reversible Bimolecular
Reactions: SIAM Journal on Applied Mathematics
[10/13]
McMahon J., Goriely A., Tabor M.: Nonlinear Morphoelastic Plates II: Exodus to Buckled States: Mathematics and Mechanics of Solids
[10/12]
McMahon J., Goriely A., Tabor M.: Nonlinear Morphoelastic Plates I: Genesis of Residual Stress: Mathematics and Mechanics of Solids
[10/11]
De Pascalis R., Destrade M., Goriely A.: Nonlinear Correction to the Euler Buckling Formula for Compressible
Cylinders: Journal of Elasticity
[10/10]
Goriely A., Vandiver R.: On the mechanical stability of growing arteries: IMA journal of Applied Mathematics
[10/09]
Goriely A., Moulton D. E.: Anticavitation and differential growth in elastic shells: Journal of Elasticity
[10/08]
Reis T., Dellar P. J.: A volume-preserving sharpening approach for the propagation of sharp phase
boundaries in multiphase lattice Boltzmann simulations: Computers and Fluids
[10/07]
Majumdar A., Peppin S. S. L., Style R., Sander G.: Frost Heave In Compressible Soils:
[10/06]
Zygalakis K. C., Roose T.: Derivation of a dual porosity model for the uptake of nutrients by root
hairs: (OCCAM Technical Report)
[10/05]
Escudero C., Yates C. A., Buhl J., Couzin I. D., Erban R., Kevrekidis I. G., Maini P. K.: Ergodic directional switching in mobile insect groups: Physical Review E
[10/04]
Newby J., Bressloff P. C.: Random intermittent search and the tug-of-war model of motor-driven
transport: Journal of Statistical Mechanics
[10/03]
Kilpatrick Z. P., Bressloff P. C.: Stability of bumps in piecewise smooth neural fields with nonlinear
adaptation: Physica D
[10/02]
Hinch E. J.: Determining the equation of state of highly plasticised metals from boundary
velocimetry Part II. An inverse problem or not: Journal of Engineering Mathematics
[10/01]
Guazzelli É. and Hinch E. J.: Fluctuations and instability in
sedimentation: Annual Reviews in Fluid Mechanics
2009 Pre Prints and Publications
[09/50]
Gaffney E. A., Gadelha H., Smith D. J., Blake J. R., Kirkman-Brown J. C.: Mammalian Sperm Motility: Observation and Theory: Annual Reviews of Fluid Mechanics
[09/49]
Boston E. A. J., Gaffney E. A.: Incorporating The Influence of Toxicity Constraints in
Models of Chemotherapeutic Scheduling: Mathematical Medicine and Biology
[09/48]
Cominetti O., Matzavinos A., Samarasinghe S., Kulasiri D., Liu S., Maini P. K., Erban R.: DifFUZZY: A fuzzy spectral clustering algorithm for complex data sets: International Journal of Computational Intelligence in Bioinformatics and Systems Biology
[09/47]
Ppotsepaev R. V., Farmer C. L., Aziz M.: Stochastic Partial Differential Equations as priors in ensemble methods for solving inverse problems: (OCCAM Technical Report)
[09/46]
Yates C. A., Baker R. E., Erban R., Maini P. K.: Refining self-propelled particle models for collective behaviour: Canadian Applied Mathematics Quarterly
[09/45]
Wright G. B., Flyer N.: A Hybrid Radial Basis Function - Pseudospectral Method for Thermal Convection in a 3-D Spherical Shell :Geophysics, Geochemistry, Geosystems
[09/44]
Finka M., Niederer S. A., Cherry E. M., Fenton F. H., Koivumki J. T., Seemann G., Thul R., Zhang H., Sachse F. B., Beard D., Crampin E. J., Smith N. P.: Cardiac cell modelling: Observations from the heart of the cardiac physiome project:Progress in Biophysics and Molecular Biology
[09/43]
Lazic S. E.: Pseudoreplication invalidates the results of many neuroscientific studies:BMC Neuroscience
[09/42]
Melykuti B., Burrage K., Zygalakis K. C.: Fast stochastic simulation of biochemical reaction systems by alternative formulations of the Chemical Langevin Equation: Journal of Chemical Physics
[09/41]
Haynes P. H., Hoang V. H., Norris J. R., Zygalakis K. C.: Homogenization for advection-diffusion in a perforated domain: Probability and Mathematical Genetics: Papers in Honour of Sir John Kingman, LMS Lecture Notes Series (Book)
[09/40]
Kilpatrick Z. P., Bressloff P. C.: Stationary bumps in a piecewise smooth neural field model with synaptic depression:SIAM Journal of Applied Math
[09/39]
Kilpatrick Z. P., Bressloff P. C.: Spatially structured oscillations in a two-dimensional excitatory neuronal network with synaptic depression: Journal of Computational Neuroscience
[09/38]
Goswami D., Pani A. K., Yadav S.: Optimal L2 estimates for semidiscrete Galerkin methods for parabolic integro-differential equations with nonsmooth data
[09/37]
Goswami D., Pani A. K.: Optimal L2-error estimates for the semidiscrete Galerkin approximation to a second order linear parabolic initial and boundary value problem with nonsmooth initial data: Numerical Functional Analysis and Optimizations
[09/36]
Shum H., Gaffney E. A., Smith D. J.: Modelling bacterial behaviour close to a no-slip plane boundary: the influence of bacterial geometry: Proceedings of the Royal Society A
[09/35]
Tran K., Smith N., Loiselle D., Crampin E.: A metabolite-sensitive, thermodynamically-constrained model of cardiac cross-bridge cycling: Implications for force development during ischemia: Biophysical Journal
[09/34]
Majumdar A., Robbins J. M., Zyskin M.: Tangent unit-vector fields: nonabelian homotopy invariants and the Dirichlet energy: Acta Mathematica Scientia
[09/33]
Ball J. M., Majumdar A.: Nematic liquid crystals : from Maier-Saupe to a continuum theory: Proceedings of ECLC 2009, Molecular Crystals and Liquid Crystals
[09/32]
Benner P., Faßbender H., Stoll M.: A Hamiltonian Krylov-Schur-type method based on the symplectic Lanczos process: Linear Algebra & its Applications
[09/31]
Bressloff P. C.: Stochastic neural field theory and the system-size expansion: SIAM Journal of Applied Mathematics
[09/30]
Pani A. K., Yadav S.: An hp-Local Discontinuous Galerkin method for Parabolic Integro-Differential Equations: Journal of Scientific Computing
[09/29]
Rees T., Stoll M., Wathen A.: All-at-once preconditioning in PDE-constrained optimization: Kybernetika
[09/28]
Newby J. M., Bressloff P. C.: Quasi-steady state reduction of molecular motor-based models of directed intermittent search: Bulletin of Mathematical Biology
[09/27]
Derfel G., van Brunt B., Wake G. C.: A Cell Growth Model Revisited
[09/26]
Wake G. C., Begg R. E.: Functional differential equations arising in cell-growth: MATEMATIKA
[09/25]
Stoll M., Wathen A.: Preconditioning for active set and projected gradient methods as semi-smooth Newton methods for PDE-constrained optimization with control constraints: Numerical Linear Algebra with Applications
[09/24]
Aydemir E., Breward C. J. W., Witelski T. P.: The effect of polar lipids on tear film dynamics: Bulletin of Mathematical Biology
[09/23]
Peppin S. S. L., Majumdar A., Wettlaufer J. S.: Morphological instability of a nonequilibrium icecolloid interface: Proceedings of The Royal Society A
[09/22]
Majumdar A., Robbins J. M., Zyskin M.: Tangent unit-vector fields: nonabelian homotopy invariants and the Dirichlet energy: Comptes Rendus Mathematique
[09/21]
Fornberg B.: A finite difference method for free boundary problems: Journal of Computational and Applied Mathematics
[09/20]
Charpin J. P. F., Kobo N. S., Legodi K., Makinde O. D., Ngnotchouye J. M. T., Ockendon H., Owinoh A. Z., Peppin S. S. L., Whiteley J.: Pebble bed: reflector treatment and pressure velocity coupling
[09/19]
Zygalakis K. C.: On the existence and the applications of modified equations for stochastic differential equations: SIAM Journal of Scientific Computing
[09/18]
Erban R., Chapman S. J., Kevrekidis I. G., Vejchodsky T.: Analysis of a Stochastic Chemical System Close to a Sniper Bifurcation of its Mean Field Model: SIAM Journal of Applied Mathematics
[09/17]
Lee S. S., Gaffney E. A., Monk N. A. M.: The Influence of Gene Expression Time Delays on Gierer-Meinhardt Pattern Formation Systems: Bulletin of Mathematical Biology
[09/16]
Baker R. E., Yates C. A., Erban R.: From microscopic to macroscopic descriptions of cell migration on growing domains: Bulletin of Mathematical Biology
[09/15]
Rees T., Stoll M.: Block triangular preconditioners for PDE constrained optimization: Numerical Linear Algebra with Applications
[09/14]
Pitt-Francis J., Pathmanathan P., Bernabeu M. O., Bordas R., Cooper J., Fletcher A., Mirams G. R., Murray P., Osborne J., Walter A., Chapman S. J., Garny A., van Leeuwen I. M. M., Maini P. K., Rodriguez B., Whiteley J. P., Byrne H. M., Gavaghan D. J.: Chaste: a test-driven approach to software development for physiological modelling: Computational Physics Communication
[09/13]
Erban R., Chapman S. J: Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions: Physical Biology
[09/12]
Xue C., Othmer H. G., Erban R.: From Individual to Collective Behavior of Unicellular Organisms: Recent Results and Open Problems: Proceedings of the 2nd Okinawa Conference on Mathematics and Biology:Multi-Scale Phenomena in Biology Workshop
[09/11]
Pathmanathan P., Gavaghan D. J., Whiteley J. P.: A Comparison of Numerical Methods used for Finite Element Modelling of Soft Tissue Deformation: Journal of Strain Analysis
[09/10]
Majumdar A., Zarnescu A.: Landau-De Gennes theory of nematic liquid crystals: the Oseen-Frank limit and beyond: Archive of Rational Mechanics and Analysis
[09/09]
Majumdar A.: Equilibrium order parameters of nematic liquid crystals in the Landau-De Gennes theory: European Journal of Applied Mathematics
[09/08]
Whiteley J. P.: Model reduction using a posteriori analysis: Mathematical Biosciences
[09/07]
Southern J. A., Plank G., Vigmond E. J., Whiteley J. P.: Solving the Coupled System Improves Computational Efficiency of the Bidomain Equations: IEEE Transactions on Biomedical Engineering
[09/06]
Yates C. A., Erban R., Escudero C., Couzin I. D., Buhl J., Kevrekidis I. G., Maini P. K., Sumpter D. J. T.: Inherent noise can facilitate coherence in collective swarm motion: PNAS (Proceedings of the National Academy of Sciences of the United States of America)
[09/05]
Peppin S. S. L., Spannuth M. J., Wettlaufer J. S.: Onsager reciprocity in premelting solids: Journal of Statistical Physics
[09/04]
Madzvamuse A., Gaffney E. A., Maini P. K.: Stability analysis of reaction-diffusion systems with time-dependent coefficients on growing domains: Bulletin of Mathematical Biology
[09/03]
Moreo P., Gaffney E. A., García-Aznar J. M., Doblaré M.: On the modelling of biological patterns with mechanochemical models: insights from analysis and computation: Bulletin of Mathematical Biology
[09/02]
Peppin S. S. L.: Diffusion and permeation in binary solutions: Application to protein ultrafiltration: Journal of Non-Equilibrium Thermodynamics
[09/01]
Gaffney E. A., Tiffany J. M., Yokoi N., Bron A. J.: A Mass and Solute Balance Model for Tear Volume and Osmolarity in The Normal And The Dry Eye: Progress in Retinal and Eye Research