SHEEP: signed hamiltonian eigenvector embedding for proximity
Babul, S Lambiotte, R (14 Feb 2023)
Thu, 11 May 2023

12:00 - 13:00
L1

Bifurcations leading to oscillation in small chemical reaction networks

Murad Banaji
(OCIAM)
Abstract
Which systems of chemical reactions permit oscillation? The study of chemical oscillations has a long history, but we are still far from any structural characterisation of oscillatory reaction networks. I'll summarise recent work on identifying Andronov-Hopf and Bautin bifurcations, leading to oscillation and even multiple nondegenerate periodic orbits, in bimolecular mass action networks. In fact, a mixture of theory and computational algebra allows us to fully enumerate networks of minimal size admitting these bifurcations, including checking nondegeneracy and transversality conditions across the whole parameter space. We find that bifurcations leading to (stable) oscillation in small networks are not quite as rare as often believed. The results can be used alongside previous theory on "inheritance" to identify larger oscillatory networks via examination of their subnetworks. This is joint work with Balázs Boros.
Thu, 15 Jun 2023
12:00
L1

Reconciling ecology and evolutionary game theory: or ‘when not to think cooperation’

Corina Tarnita
(Princeton University)
Abstract

I’m excited to share with everyone some new, unpublished work that we are just in the process of wrapping up and could use everyone’s reactions. It is a reconciliation of evolutionary game theory and ecological dynamics that I have wrestled with since I moved from an evolution program into an ecology-heavy department. It always seemed like, depending on the problem I was thinking about, I had to change my perspective and approach it as either an evolutionary game theorist, or an ecologist; and yet I had this nagging feeling that, at its core, the problem was often one and the same, and therefore one theoretical framework should suffice. So when should one write down an n-type replicator equation and when should one write down an n-species Lotka-Volterra system; and what does it mean mathematically and biologically when one has made such a choice? In the process of reconciling, I also got a deeper appreciation of what is and is not a proper game, such as a Prisoner’s Dilemma. These findings can help shed light on previously puzzling empirical findings.

Thu, 01 Jun 2023
12:00
L1

Plant Tropisms as a Window on Plant Computational Processes

Yasmine Meroz
(Tel Aviv University)

Note: we would recommend to join the meeting using the Zoom client for best user experience.

Abstract

A growing plant is a fascinating system involving multiple fields. Biologically, it is a multi-cellular system controlled by bio-chemical networks. Physically, it is an example of an "active solid" whose element (cells) are active, performing mechanical work to drive the evolving geometry. Computationally, it is a distributed system, processing a multitude of local inputs into a coordinated developmental response. In this talk I will discuss how plants, a living information-processing organism, uses physical laws and biological mechanisms to alter its own shape, and negotiate its environment. Here I will focus on two examples reflecting the computational and mechanical aspects: (i) probing temporal integration in gravitropic responses reveals plants sum and subtract signals, (ii) the interplay between active growth-driven processes and passive mechanics.

Thu, 25 May 2023
12:00
L1

The Thermodynamics of Mind

Gustavo Deco
(Universitat Pompeu Fabra)
Abstract

We propose a unified theory of brain function called ‘Thermodynamics of Mind’ which provides a natural, parsimonious way to explain the underlying computational mechanisms. The theory uses tools from non-equilibrium thermodynamics to describe the hierarchical dynamics of brain states over time. Crucially, the theory combines correlative (model-free) measures with causal generative models to provide solid causal inference for the underlying brain mechanisms. The model-based framework is a powerful way to use regional neural dynamics within the hierarchical anatomical brain connectivity to understand the underlying mechanisms for shaping the temporal unfolding of whole-brain dynamics in brain states. As such this model-based framework fitted to empirical data can be exhaustively investigated to provide objectively strong causal evidence of the underlying brain mechanisms orchestrating brain states. 

Mon, 20 Feb 2023
14:45
L1

TBC

Gustavo Deco
(Universitat Pompeu Fabra)
Tue, 06 Jun 2023

15:00 - 16:00
L4

Generating tuples of Fuchsian groups

Richard Weidmann
Abstract

Generating n-tuples of a group G, or in other words epimorphisms Fₙ→G are usually studied up to the natural right action of Aut(Fₙ) on Epi(Fₙ,G); here Fₙ is the free group of n generators. The orbits are then called Nielsen classes. It is a classic result of Nielsen that for any n ≥ k there is exactly one Nielsen class of generating n-tuples of Fₖ. This result was generalized to surface groups by Louder.

In this talk the case of Fuchsian groups is discussed. It turns out that the situation is much more involved and interesting. While uniqueness does not hold in general one can show that each class is represented by some unique geometric object called an "almost orbifold covers". This can be thought of as a classification of Nielsen classes. This is joint work with Ederson Dutra.

Thu, 18 May 2023
12:00
L1

Two Stories of Light and Life

Maziyar Jalaal
(University of Amsterdam)
Abstract

My talk will have two parts. First, I will tell you how a single cell produces light to survive; then, I will explain how a huddle of chloroplasts in cells form glasses to optimize plant life. Part I: Bioluminescence (light generation in living organisms) has mesmerized humans since thousands of years ago. I will first go over the recent progress in experimental and mathematical biophysics of single-cell bioluminescence (PRL 125 (2), 028102, 2020) and then will go beyond and present a lab-scale experiment and a continuum model of bioluminescent breaking waves. Part II: To remain efficient during photosynthesis, plants can re-arrange the internal structure of cells by the active motion of chloroplasts. I will show that the chloroplasts can behave like a densely packed light-sensitive active matter, whose non-gaussian athermal fluctuations can lead to various self-organization scenarios, including glassy dynamics under dim lights (PNAS 120 (3), 2216497120, 2023). To this end, I will also present a simple model that captures the dynamic of these biological glasses.

Thu, 04 May 2023

12:00 - 13:00
L1

Can we tailor the behavior of flexible sheets in flows by adding cuts or folds?

Sophie Ramananarivo
(Ecole Polytechnique)
Abstract

Lightweight compliant surfaces are commonly used as roofs (awnings), filtration systems or propulsive appendages, that operate in a fluid environment. Their flexibility allows for shape to change in fluid flows, to better endure harsh or fluctuating conditions, or enhance flight performance of insect wings for example. The way the structure deforms is however key to fulfill its function, prompting the need for control levers. In this talk, we will consider two ways to tailor the deformation of surfaces in a flow, making use of the properties of origami (folded sheet) and kirigami (sheet with a network of cuts). Previous literature showed that the substructure of folds or cuts allows for sophisticated shape morphing, and produces tunable mechanical properties. We will discuss how those original features impact the way the structure interacts with a flow, through combined experiments and theory. We will notably show that a sheet with a symmetric cutting pattern can produce an asymmetric deformation, and study the underlying fluid-structure couplings to further program shape morphing through the cuts arrangement. We will also show that extreme shape reconfiguration through origami folding can cap fluid drag.

Thu, 27 Apr 2023

12:00 - 13:00
L1

Coiled Muscles: Snapping Beams: From Nonlinear Mechanics to Miniature Robotic Design

Sameh Tawfick
(University of Illinois)
Abstract

My group is developing a roadmap to replace bulky electric motors in miniature robots requiring large mechanical work output.

First, I will describe the mechanics of coiled muscles made by twisting nylon fishing lines, and how these actuators use internal strain energy to achieve a “record breaking” performance. Then I will describe intriguing hierarchical super-, and hyper-coiled artificial muscles which exploit the interplay between nonlinear mechanics and material microstructure. Next, I will describe their use to actuate the dynamic snapping of insect-scale jumping robots. The combination of strong but slow muscles with a fast-snapping beam gives rise to dynamic buckling cascade phenomena leading to effective robotic jumping mechanisms.

These examples shed light on the future of automation propelled by new bioinspired materials, nonlinear mechanics, and unusual manufacturing processes.

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