7 March 2012
The graph realization problem has received a great deal of attention in recent years, due to its importance in applications such as wireless sensor networks and structural biology. We introduce the ASAP algorithm, for the graph realization problem in R^d, given a sparse and noisy set of distance measurements associated to the edges of a globally rigid graph. ASAP is a divide and conquer, non-incremental and non-iterative algorithm, which integrates local distance information into a global structure determination. Our approach starts with identifying, for every node, a subgraph of its 1-hop neighborhood graph, which can be accurately embedded in its own coordinate system. In the noise-free case, the computed coordinates of the sensors in each patch must agree with their global positioning up to some unknown rigid motion, that is, up to translation, rotation and possibly reflection. In other words, to every patch there corresponds an element of the Euclidean group Euc(3) of rigid transformations in R^3, and the goal is to estimate the group elements that will properly align all the patches in a globally consistent way. The reﬂections and rotations are estimated using a recently developed eigenvector synchronization algorithm, while the translations are estimated by solving an overdetermined linear system. Furthermore, the algorithm successfully incorporates information specific to the molecule problem in structural biology, in particular information on known substructures and their orientation. In addition, we also propose SP-ASAP, a faster version of ASAP, which uses a spectral partitioning algorithm as a preprocessing step for dividing the initial graph into smaller subgraphs. Our extensive numerical simulations show that ASAP and SP-ASAP are very robust to high levels of noise in the measured distances and to sparse connectivity in the measurement graph, and compare favorably to similar state-of-the art localization algorithms. Time permitting, we briefly discuss the analogy between the graph realization and the low-rank matrix completion problems, as well as an application of synchronization over Z_2 and its variations to bipartite multislice networks.
- OCCAM Wednesday Morning Event