The risk of SARS-CoV-2 outbreaks in low prevalence settings following the removal of travel restrictions
 Sachak-Patwa, R Byrne, H Dyson, L Thompson, R doi:10.1101/2021.05.21.21257589
Estimating local outbreak risks and the effects of non-pharmaceutical interventions in age-structured populations: SARS-CoV-2 as a case study
 Lovell-Read, F Shen, S Thompson, R doi:10.1101/2021.04.27.21256163
Quantifying within-school SARS-CoV-2 transmission and the impact of lateral flow testing in secondary schools in England
 Leng, T Hill, E Holmes, A Southall, E Thompson, R Tildesley, M Keeling, M Dyson, L doi:10.1101/2021.07.09.21260271
Waning, Boosting and a Path to Endemicity for SARS-CoV-2
 Keeling, M Thomas, A Hill, E Thompson, R Dyson, L Tildesley, M Moore, S doi:10.1101/2021.11.05.21265977
The effect of notification window length on the epidemiological impact of COVID-19 contact tracing mobile applications
 Leng, T Hill, E Keeling, M Tildesley, M Thompson, R doi:10.1101/2021.11.08.21266079
Generation time of the alpha and delta SARS-CoV-2 variants: an epidemiological analysis
 Hart, W Miller, E Andrews, N Waight, P Maini, P Funk, S Thompson, R (04 May 2022)
The impact of cross-reactive immunity on the emergence of SARS-CoV-2 variants
 Thompson, R Southall, E Daon, Y Lovell-Read, F Iwami, S Thompson, C Obolski, U (01 Jan 2022) doi:10.1101/2022.09.20.22280161
Estimation of heterogeneous instantaneous reproduction numbers with application to characterize SARS-CoV-2 transmission in Massachusetts counties
 Zhou, Z Kolaczyk, E Thompson, R White, L doi:10.1101/2021.12.02.21267164
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