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Coupling all-atom molecular dynamics simulations of ions in water with Brownian dynamics.
Proceedings. Mathematical, physical, and engineering sciences issue 2186 volume 472 page 20150556- (February 2016)
The two-regime method for optimizing stochastic reaction-diffusion simulations.
J R Soc Interface issue 70 volume 9 page 859-868 (7 May 2012) Full text available
Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions.
Phys Biol issue 4 volume 6 page 046001- (21 August 2009) Full text available
Reactive boundary conditions for stochastic simulations of reaction-diffusion processes
Physical Biology issue 1 volume 4 page 16-28 (24 January 2007)
From individual to collective behavior in bacterial chemotaxis
SIAM Journal on Applied Mathematics issue 65 volume 2 page 361-391 (2004)
Analysis of a stochastic chemical system close to a SNIPER bifurcation
of its mean-field model
SIAM JOURNAL ON APPLIED MATHEMATICS issue 3 volume 70 page 984-1016 (2009) Full text available
Multiscale Stochastic Reaction-Diffusion Algorithms Combining Markov Chain Models with Stochastic Partial Differential Equations.
Bulletin of mathematical biology issue 8 volume 81 page 3185-3213 (August 2019)
Multi-resolution dimer models in heat baths with short-range and long-range interactions
Interface Focus (19 April 2019)
Noise-induced Mixing and Multimodality in Reaction Networks
European Journal of Applied Mathematics (18 September 2018) Full text available
Varying the resolution of the Rouse model on temporal and spatial
scales: application to multiscale modelling of DNA dynamics
SIAM: Multiscale Modeling and Simulation (16 November 2017)
ADM-CLE APPROACH FOR DETECTING SLOW VARIABLES IN CONTINUOUS TIME MARKOV CHAINS AND DYNAMIC DATA
SIAM JOURNAL ON SCIENTIFIC COMPUTING issue 1 volume 39 page B76-B101 (2017) Full text available
Applied Mathematics, Mathematical Biology, Multiscale Modelling, Partial Differential Equations, Stochastic Simulation Algorithms, Gene Regulatory Networks, Chemotaxis, Collective Animal Behaviour