Multi-Grid Reaction-Diffusion Master Equation: Applications to Morphogen Gradient Modelling
Erban, R Winkelmann, S Bulletin of Mathematical Biology volume 87 issue 1 (27 Nov 2024)
Thu, 28 Nov 2024

11:00 - 12:00
TCC VC

Probability logic

Ehud Hrushovski
(University of Oxford)

"Can be a social event for employees, or can include a year-end review, bonuses, gifts, or other forms of recognition. They can be held at the workplace or off-site, and can involve the whole company or just certain teams or departments." (Google AI overview)

Well, there are no plans for reviews or bonuses or gifts, but we are good for everything else.

Oxford Mathematics Christmas Party, 12th December, 4pm, Common Room. All teams welcome.

Images of fruit reorientation at minus 72, 48, 24, and 1 h (left-to-right) to launch & images of seed dispersal at 2, 5, 10, and 20 ms (left-to-right) after abscission of the stem
A team of Oxford Mathematicians together with colleagues from the Oxford Botanic Garden and the University of Manchester has solved a mystery that has intrigued scientists for centuries. The squirting cucumber (Ecballium elaterium, from the Greek ‘ekballein,’ meaning to throw out) is named for the ballistic method the species uses to disperse its seeds. But how does it do it?
Fri, 14 Mar 2025

11:00 - 12:00
L4

Hierarchical inference for more mechanistic functional response models using machine learning

Prof Ben Lambert
(Dept of Statistics, University of Oxford)
Abstract

Consumer-resource interactions are central to ecology, as all organisms rely on consuming resources to survive. Functional responses describe how a consumer's feeding rate changes with resource availability, influenced by processes like searching for, capturing, and handling resources. To study functional responses, experiments typically measure the amount of food consumed—often in discrete units like prey—over a set time. These experiments systematically vary prey availability to observe how it affects the consumer's feeding behaviour. The data generated by such experiments are often analysed using differential equation-based models. Here, we argue that such models do not represent a realistic data-generating process for many such experiments and propose an alternative stochastic individual-based model. This class of models, however, is expensive for inference, and we use machine learning methods to expedite fitting these models to data. We then use our method to do generalised linear model-based inference for a series of experiments conducted on a stickleback fish. Our methodology is made available to others in a Python package for Bayesian hierarchical inference for stochastic, individual-based models of functional responses.

 

Fri, 07 Mar 2025

11:00 - 12:00
L4

Nonlocal advection-diffusion for modelling organism space use and movement

Prof Jonathan Potts
(Department of Computer Science The University of Sheffield)
Abstract

How do mobile organisms situate themselves in space?  This is a fundamental question in both ecology and cell biology but, since space use is an emergent feature of movement processes operating on small spatio-temporal scales, it requires a mathematical approach to answer.  In recent years, increasing empirical research has shown that non-locality is a key aspect of movement processes, whilst mathematical models have demonstrated its importance for understanding emergent space use patterns.  In this talk, I will describe a broad class of models for modelling the space use of interacting populations, whereby directed movement is in the form of non-local advection.  I will detail various methods for ascertaining pattern formation properties of these models, fundamental for answering the question of how organisms situate themselves in space, and describe some of the rich variety of patterns that emerge. I will also explain how to connect these models to data on animal and cellular movement.

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