Accounting for cross-immunity can improve forecast accuracy during influenza epidemics
 Sachak-Patwa, R Byrne, H Thompson, R (20 Jul 2020) doi:10.1101/2020.07.19.20157214
Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts
 Abbott, S Hellewell, J Thompson, R Sherratt, K Gibbs, H Bosse, N Munday, J Meakin, S Doughty, E Chun, J Chan, Y Finger, F Campbell, P Endo, A Pearson, C Gimma, A Russell, T Flasche, S Kucharski, A Eggo, R Funk, S Wellcome Open Research volume 5 112 (01 Jun 2020) doi:10.12688/wellcomeopenres.16006.1
Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts
 Abbott, S Hellewell, J Thompson, R Sherratt, K Gibbs, H Bosse, N Munday, J Meakin, S Doughty, E Chun, J Chan, Y Finger, F Campbell, P Endo, A Pearson, C Gimma, A Russell, T Flasche, S Kucharski, A Eggo, R Funk, S Wellcome Open Research volume 5 112 (08 Dec 2020) doi:10.12688/wellcomeopenres.16006.2
An analysis of school absences in England during the Covid-19 pandemic
 Southall, E Holmes, A Hill, E Atkins, B Leng, T Thompson, R Dyson, L Keeling, M Tildesley, M (16 Feb 2021) doi:10.1101/2021.02.10.21251484
Optimal health and economic impact of non-pharmaceutical intervention measures prior and post vaccination in England: a mathematical modelling study
 Tildesley, M Vassall, A Riley, S Jit, M Sandmann, F Hill, E Thompson, R Atkins, B Edmunds, J Dyson, L Keeling, M (25 Apr 2021) doi:10.1101/2021.04.22.21255949
Spike in asthma healthcare presentations in eastern England during June 2021: a retrospective observational study using syndromic surveillance data
 Elliot, A Bennett, C Hughes, H Morbey, R Todkill, D Thompson, R Landeg, O OConnell, E Seltzer, M Lang, W Edeghere, O Oliver, I (26 Oct 2021) doi:10.1101/2021.10.26.21264613
Isolation may select for earlier and higher peak viral load but shorter duration in SARS-CoV-2 evolution
 Sunagawa, J Kim, K Park, H Komorizono, R Cho, S Torres, L Woo, J Jeong, Y Hart, W Thompson, R Aihara, K Iwami, S Yamaguchi, R (02 Mar 2023) doi:10.21203/rs.3.rs-2619513/v1
Isolation may select for earlier and higher peak viral load but shorter duration in SARS-CoV-2 evolution
 Sunagawa, J Kim, K Park, H Komorizono, R Choi, S Torres, L Woo, J Jeong, Y Hart, W Thompson, R Aihara, K Iwami, S Yamaguchi, R (24 Feb 2023) doi:10.1101/2023.02.23.529742
Isolation may select for earlier and higher peak viral load but shorter duration in SARS-CoV-2 evolution
 Sunagawa, J Kim, K Park, H Komorizono, R Choi, S Torres, L Woo, J Jeong, Y Hart, W Thompson, R Aihara, K Iwami, S Yamaguchi, R (24 Feb 2023) doi:10.1101/2023.02.23.529742
Isolation may select for earlier and higher peak viral load but shorter duration in SARS-CoV-2 evolution
 Sunagawa, J Kim, K Park, H Komorizono, R Cho, S Torres, L Woo, J Jeong, Y Hart, W Thompson, R Aihara, K Iwami, S Yamaguchi, R (02 Mar 2023) doi:10.21203/rs.3.rs-2619513/v1
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