Fri, 20 Jan 2023

14:00 - 15:00
L3

The inevitable emergence of density-dependent diffusion in expanding phage populations

Dr Diana Fusco
(Dept of Physics University of Cambridge)
Abstract

Reaction-diffusion waves have long been used to describe the growth and spread of populations undergoing a spatial range expansion. Such waves are generally classed as either pulled, where the dynamics are driven by the very tip of the front and stochastic fluctuations are high, or pushed, where cooperation in growth or dispersal results in a bulk-driven wave in which fluctuations are suppressed. These concepts have been well studied experimentally in populations where the cooperation leads to a density-dependent growth rate. By contrast, relatively little is known about experimental populations that exhibit a density-dependent dispersal rate.

Using bacteriophage T7 as a test organism, we present novel experimental measurements that demonstrate that the diffusion of phage T7, in a lawn of host E. coli, is hindered by steric interactions with host bacteria cells. The coupling between host density, phage dispersal and cell lysis caused by viral infection results in an effective density-dependent diffusion rate akin to cooperative behavior. Using a system of reaction-diffusion equations, we show that this effect can result in a transition from a pulled to pushed expansion. Moreover, we find that a second, independent density-dependent effect on phage dispersal spontaneously emerges as a result of the viral incubation period, during which phage is trapped inside the host unable to disperse. Our results indicate both that bacteriophage can be used as a controllable laboratory population to investigate the impact of density-dependent dispersal on evolution, and that the genetic diversity and adaptability of expanding viral populations could be much greater than is currently assumed.

A multiscale model explains oscillatory slowing and neuronal hyperactivity in Alzheimer’s disease
Alexandersen, C de Haan, W Bick, C Goriely, A Journal of the Royal Society Interface volume 20 issue 198 (04 Jan 2023)
Computation of power law equilibrium measures balls of arbitary dimension
Gutleb, T Carrillo de la Plata, J Olver, S Constructive Approximation (23 Nov 2022)
Banner for day

Our annual Postgraduate Open Day is now available on our YouTube Channel. Hear about postgraduate life in Oxford from our students, the range of DPhil and taught master's programmes we offer from our faculty, and tips on how to decide whether postgraduate life is for you, and if you think it is, the best way of making it a success.

Unified synthetic Ricci curvature lower bounds for Riemannian and sub-Riemannian structures
Barilari, D Mondino, A Rizzi, L (14 Nov 2022)

Ageing musicians playing the songs they wrote when young can be a little 'awkward'; but in this case Paul Weller makes it work. Boy About Town from his Jam days is a song about a defiant 21-year-old. Nearly 40 years of life later, with the same words, it is something different. 

Young first, then older.

Thu, 23 Feb 2023

12:00 - 13:00
L4

Ocean Modelling at the Met Office

Mike Bell
(Met Office Fellow in Ocean Dynamics)
Abstract

Mike will briefly describe the scope and shape of science within the Met Office and of his career there. He will also outline the coordination of the development of the NEMO ocean model, which he leads, and work to ensure the marine systems at the Met Office work efficiently on modern High Performance Computers (HPCs).  In the second half of the talk, Mike will focus on two of his current scientific interests: accurate calculation of horizontal pressure forces in models with steeply sloping coordinates; and dynamical interpretations of meridional overturning circulations and ocean heat uptake.

Synthetic Data -- what, why and how?
Jordon, J Szpruch, L Houssiau, F Bottarelli, M Cherubin, G Maple, C Cohen, S Weller, A (06 May 2022)
TAPAS: a Toolbox for Adversarial Privacy Auditing of Synthetic Data
Houssiau, F Jordon, J Cohen, S Daniel, O Elliott, A Geddes, J Mole, C Rangel-Smith, C Szpruch, L (11 Nov 2022)
Subscribe to