This talk is motivated by the following question: "how can one reconstruct the geometry of a state space given a collection of observed time series?" A well-studied technique for metric fusion is Similarity Network Fusion (SNF), which works by mixing random walks. However, SNF behaves poorly in the presence of correlated noise, and always reconstructs an intrinsic metric. We propose a new methodology based on delay embeddings, together with a simple orthogonalization scheme that uses the tangency data contained in delay vectors. This method shows promising results for some synthetic and real-world data. The authors suspect that there is a theorem or two hiding in the background -- wild speculation by audience members is encouraged. 

Persistence theory provides useful tools to extract information from real-world data sets, and profits of techniques from different mathematical disciplines, such as Morse theory and quiver representation. In this seminar, I am going to present a new approach for studying persistence theory using model categories. I will briefly introduce model categories and then describe how to define a model structure on the category of the tame parametrised chain complexes, which are chain complexes that evolve in time. Using this model structure, we can define new invariants for tame parametrised chain complexes, which are in perfect accordance with the standard barcode when restricting to persistence modules. I will illustrate with some examples why such an approach can be useful in topological data analysis and what new insight on standard persistence can give us. 

Distinguishing classes of surfaces in $\mathbb{R}^n$ is a task which arises in many situations. There are many characteristics we can use to solve this classification problem. The Persistent Homology Transform allows us to look at shapes in $\mathbb{R}^n$ from $S^{n-1}$ directions simultaneously, and is a useful tool for surface classification. Using the Julia package DiscretePersistentHomologyTransform, we will look at some example curves in $\mathbb{R}^2$ and examine distinguishing features. 

The TMD algorithm (Kanari et al. 2018) computes the barcode of a neuron (tree) with respect to the radial or path distance from the soma (root). We are interested in the inverse problem: how to understand the space of trees that are represented by the same barcode. Our tool to study this spaces is the stochastic TNS algorithm (Kanari et al. 2020) which generates trees from a given barcode in a biologically meaningful way. 

I will present some theoretical results on the space of trees that have the same barcode, as well as the effect of adding noise to the barcode. In addition, I will provide a more combinatorial perspective on the space of barcodes, expressed in terms of the symmetric group. I will illustrate these results with experiments based on the TNS.

This is joint work with L. Kanari and K. Hess.