Estimating risk over time using data from targeted surveillance systems: Application to bovine tuberculosis in Great Britain
 Blake, I Donnelly, C Epidemics volume 4 issue 4 179-186 (26 Dec 2012)
The Contribution of Badgers to Confirmed Tuberculosis in Cattle in High-Incidence Areas in England
 Donnelly, C Nouvellet, P PLOS Currents volume 5 issue Outbreaks ecurrents.outbreaks.097a904d3f3619db2fe78d24bc776098 (2013)
Rabies and Canine Distemper Virus Epidemics in the Red Fox Population of Northern Italy (2006–2010)
 Nouvellet, P Donnelly, C De Nardi, M Rhodes, C De Benedictis, P Citterio, C Obber, F Lorenzetto, M Pozza, M Cauchemez, S Cattoli, G PLOS ONE volume 8 issue 4 e61588 (22 Apr 2013)
Using a Nonparametric Multilevel Latent Markov Model to Evaluate Diagnostics for Trachoma
 Koukounari, A Moustaki, I Grassly, N Blake, I Basáñez, M Gambhir, M Mabey, D Bailey, R Burton, M Solomon, A Donnelly, C American Journal of Epidemiology volume 177 issue 9 913-922 (01 May 2013)
Badger-cull statistics carry uncertainty
 Donnelly, C Nature volume 499 issue 7457 154-154 (10 Jul 2013)
A Latent Markov Modelling Approach to the Evaluation of Circulating Cathodic Antigen Strips for Schistosomiasis Diagnosis Pre- and Post-Praziquantel Treatment in Uganda
 Koukounari, A Donnelly, C Moustaki, I Tukahebwa, E Kabatereine, N Wilson, S Webster, J Deelder, A Vennervald, B van Dam, G PLOS Computational Biology volume 9 issue 12 e1003402 (19 Dec 2013)
A Simple Incidence-Based Method to Avoid Misinterpretation of Bovine Tuberculosis Incidence Trends in Great Britain
 Blake, I Donnelly, C PLOS Currents volume 6 issue Outbreaks ecurrents.outbreaks.6fd216fc24317f2ce04a7c5705a30c69 (2014)
Estimating Potential Incidence of MERS-CoV Associated with Hajj Pilgrims to Saudi Arabia, 2014
 Lessler, J Rodriguez-Barraquer, I Cummings, D Garske, T Van Kerkhove, M Mills, H Truelove, S Hakeem, R Albarrak, A Ferguson, N Aguas, R Algarni, H AlHarbi, K Cauchemez, S Clapham, H Collins, C Cori, A Donnelly, C Fraser, C Jombart, T Moore, S Nouvellet, P Riley, S Salje, H Turkistani, A PLOS Currents volume 6 issue Outbreaks ecurrents.outbreaks.c5c9c9abd636164a9b6fd4dbda974369 (2014)
Badger responses to small-scale culling may compromise targeted control of bovine tuberculosis
 Bielby, J Donnelly, C Pope, L Burke, T Woodroffe, R Proceedings of the National Academy of Sciences of the United States of America volume 111 issue 25 9193-9198 (24 Jun 2014)
Ebola Virus Disease in West Africa — The First 9 Months of the Epidemic and Forward Projections
 Aylward, B Barboza, P Bawo, L Bertherat, E Bilivogui, P Blake, I Brennan, R Briand, S Chakauya, J Chitala, K Conteh, R Cori, A Croisier, A Dangou, J Diallo, B Donnelly, C Dye, C Eckmanns, T Ferguson, N Formenty, P Fuhrer, C Fukuda, K Garske, T Gasasira, A Gbanyan, S Graaff, P Heleze, E Jambai, A Jombart, T Kasolo, F Kadiobo, A Keita, S Kertesz, D Koné, M Lane, C Markoff, J Massaquoi, M Mills, H Mulba, J Musa, E Myhre, J Nasidi, A Nilles, E Nouvellet, P Nshimirimana, D Nuttall, I Nyenswah, T Olu, O Pendergast, S Perea, W Polonsky, J Riley, S Ronveaux, O Sakoba, K Santhana Gopala Krishnan, R Senga, M Shuaib, F Van Kerkhove, M Vaz, R Wijekoon Kannangarage, N Yoti, Z New England Journal of Medicine volume 371 issue 16 1481-1495 (16 Oct 2014)
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