A likelihood-based Bayesian inference framework for the calibration of
and selection between stochastic velocity-jump models
Ceccarelli, A Browning, A Baker, R (25 May 2025) http://arxiv.org/abs/2505.19292v1
The influence of cell phenotype on collective cell invasion into the
extracellular matrix
Yin, Y Waters, S Baker, R (07 Jun 2025) http://arxiv.org/abs/2506.06810v1
Mon, 16 Jun 2025
13:00
L6

An Introduction to the ZX-calculus

Martin Daan van IJcken
Abstract

 

Abstract: This talk introduces the ZX-calculus, a powerful graphical language for reasoning about quantum computations. I will start with an overview of process theories, a general framework for describing how processes act upon different types of information. I then focus on the process theory of quantum circuits, where each function (or gate) is a unitary linear transformation acting upon qubits. The ZX-calculus simplifies the set of available gates in terms of two atomic operations: Z and X spiders, which generalize rotations around the Z and X axes of the Bloch sphere. I demonstrate how to translate quantum circuits into ZX-diagrams and how to simplify ZX diagrams using a set of seven equivalences. Through examples and illustrations, I hope to convey that the ZX-calculus provides an intuitive and powerful tool for reasoning about quantum computations, allowing for the derivation of equivalences between circuits. By the end of the talk listeners should be able to understand equations written in the ZX-calculus and potentially use them in their own work.

Classical Weight-Four L-value Ratios as Sums of Calabi--Yau Invariants
Candelas, P de la Ossa, X McGovern, J (19 Mar 2025)
Classical weight-four L-value ratios as sums of Calabi-Yau invariants
Candelas, P de la Ossa, X McGovern, J SciPost Physics volume 18 issue 6 181-181 (06 Jun 2025)
Mon, 16 Jun 2025

15:30 - 16:30
L5

A unitary three-functor formalism for commutative Von Neumann algebras

Thomas Wasserman
((Oxford University))
Abstract

Six-functor formalisms are ubiquitous in mathematics, and I will start this talk by giving a quick introduction to them. A three-functor formalism is, as the name suggests, (the better) half of a six-functor formalism. I will discuss what it means for such a three-functor formalism to be unitary, and why commutative Von Neumann algebras (and hence, by the Gelfand-Naimark theorem, measure spaces) admit a unitary three-functor formalism that can be viewed as mixing sheaf theory with functional analysis. Based on joint work with André Henriques.

Fri, 05 Dec 2025

11:00 - 12:00
L4

Cell shapes, migration and mechanics determine pattern formation during development

Dr Lakshmi Balasubramaniam
(Engineering Biology University of Cambridge)
Abstract

Blood vessels are among the most vital structures in the human body, forming intricate networks that connect and support various organ systems. Remarkably, during early embryonic development—before any blood vessels are visible—their precursor cells are arranged in stereotypical patterns throughout the embryo. We hypothesize that these patterns guide the directional growth and fusion of precursor cells into hollow tubes formed from initially solid clusters. Further analysis of cells within these clusters reveals unique organization that may influence their differentiation into endothelial and blood cells. In this work, I revisit the problem of pattern formation through the lens of active matter physics, using both developing embryonic systems and in vitro cell culture models where similar patterns are observed during tissue budding. These different systems exhibit similar patterning behavior, driven by changes in cellular activity, adhesion and motility.

Fri, 28 Nov 2025

11:00 - 12:00
L4

Competition and warfare in bacteria and the human microbiome

Prof Kevin Foster
(Sir William Dunn School of Pathology University of Oxford)
Abstract

Microbial communities contain many evolving and interacting bacteria, which makes them complex systems that are difficult to understand and predict. We use theory – including game theory, agent-based modelling, ecological network theory and metabolic modelling - and combine this with experimental work to understand what it takes for bacteria to succeed in diverse communities. One way is to actively kill and inhibit competitors and we study the strategies that bacteria use in toxin-mediated warfare. We are now also using our approaches to understand the human gut microbiome and its key properties including ecological stability and the ability to resist invasion by pathogens (colonization resistance). Our ultimate goal is to both stabilise microbiome communities and remove problem species without the use of antibiotics.

Fri, 21 Nov 2025

11:00 - 12:00
L4

To be announced

Professor Alex Fletcher
(School of Mathematical and Physical Sciences University of Sheffield)
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