Fri, 23 Oct 2026

11:00 - 12:00
L4

Microscopic theories of reaction-diffusion processes and applications to biological systems

Dr Rosalba Garcia-Millan
(Dept of Mathematics, Kings College London)
Abstract

Reaction-diffusion processes underpin countless biological phenomena. In these systems, fluctuations play an important role, particularly when the number of interacting units is small. In chemical reactions, for example, mean-field approaches such as the law of mass action neglect fluctuations and thus fail to capture absorbing states. In this talk, I will introduce Doi-Peliti field theory (DPFT), a microscopic framework that uses ladder operators to represent particle dynamics in second-quantized form. Its path-integral formulation is exact at the level of the action and allows observables to be calculated systematically in a perturbative expansion.

I will show how DPFT can be used to model biological systems, including oscillating neuronal avalanches [1] and disease spreading on general graphs [2]. I will also present recent progress in microscopic theories of active matter, describing the emergence of effective attraction between interacting run-and-tumble particles [3,4] and the role of delay in reconfigurable chiral microswimmers [5].


[1] J. Pausch, R. Garcia-Millan, and G. Pruessner, Time-dependent branching processes: a model of oscillating neuronal avalanches, Sci. Rep. 10, 13678 (2020). 
[2] I. Bordeu, S. Amarteifio, R. Garcia-Millan, B. Walter, N. Wei, and G. Pruessner, Volume explored by a branching random walk on general graphs. Sci. Rep. 9, 15590 (2019).
[3] R. Garcia-Millan, L. Cocconi, Z. Zhang, M. Bothe, L. Chen, Z. Zhen, G. Pruessner, Effective attraction by repulsion, arXiv:2605.01421 (2026). 
[4] R. Garcia-Millan, Z. Zhang, L. Cocconi, M. Bothe, L. Chen, Z. Zhen, G. Pruessner, Microscopic theory of soft run- and-tumble particles, arXiv:2605.01422 (2026).
[5] J. Peltier, C. Britton, L. Alvarez, R. Garcia-Millan, in preparation (2026).

Have your say on how your teaching, research, labs and office spaces could be improved. The University is working with architects to rethink how Oxford's spaces and buildings are designed. Share your views on which spaces work well and which ones could be improved. Your feedback will inform future design choices, as the University works towards flexible, inclusive and consistent spaces.

Spatial continuity of neurons explains non-random network architecture
Reimann, M Egas Santander, D Kanari, L Barros-Zulaica, N iScience volume 29 issue 6 116144-116144 (01 Jun 2026) doi:10.1016/j.isci.2026.116144

Our recent CDT alumna Milena Vuletic has been awarded  the 6th PLEXUS Award for AI in the Financial Sector for her DPhil thesis on Multi-asset financial markets: mathematical modelling and data-driven approaches.

Photo
Fri, 16 Oct 2026

11:00 - 12:00
L4

Emergent phenomena in protein complexes out of equilibrium: from topologically-protected states to computation

Dr Jaime Agudo-Canalejo
(Dept of Physics & Astronomy UCL)
Abstract
Protein complexes, typically made up of a small number of identical subunits, are very common in biology. These subunits can additionally undergo post-translational modifications, such as phosphorylation and dephosphorylation, resulting in a high dimensional state space for the protein complex. Importantly, such modifications are catalyzed by enzymes that are driven out of equilibrium by the consumption of a fuel such as ATP. I will discuss, from a theoretical perspective, how very simple enzyme-catalyzed operations at the single subunit level can result in emergent behaviour at the level of the entire protein complex. First, I will discuss how topologically-protected edge currents emerge and become enhanced in arbitrarily high-dimensional stochastic systems representing the state of the complex, extending previous results for two-dimensional stochastic systems [1]. Second, I will discuss how enzymes that act on a subunit in a context-dependent manner provide a molecular implementation of stochastic cellular automata,  that can be exploited to engineer molecular-scale computing devices, such as an error-tolerant memory or a finite-state machine [2].
 
[1] E. Tang, J. Agudo-Canalejo, and R. Golestanian, Phys. Rev. X 11, 031015 (2021)
[2] J. Kocka, K. Husain, and J. Agudo-Canalejo, PRX Life 4, 013036 (2026)
Interest rate models in decentralised lending protocols
Cohen, S Sanchez Betancourt, L Szpruch, L Digital Finance volume 8 issue 3 (06 Jul 2026) doi:10.1007/s42521-026-00204-4
Fri, 19 Jun 2026
13:00
L4

Simplicial Novikov Homology

Vidit Nanda
Abstract

I will describe a circle-valued Morse theory for simplicial complexes. The central objects of study are partial matchings which admit certain zigzag cycles; these cyclic matchings lift canonically to acyclic matchings on the infinite cyclic cover of the underlying simplicial complex. From the lifted acyclic matchings, we obtain a finitely generated Morse chain complex defined over the Novikov ring, which consists of power series in one variable with finite negative support. We then establish a quasi-isomorphism between this Morse-Novikov complex and the simplicial chain complex of the cyclic cover, duly completed over the Novikov ring. As a pleasant consequence, we can define new computable invariants to detect (obstructions to) the fiberedness of tame knots.

Graded unitarity in the SCFT/VOA correspondence
Ardehali, A Beem, C Lemos, M Rastelli, L Journal of High Energy Physics volume 2026 issue 6 (05 Jun 2026) doi:10.1007/jhep06(2026)075
Subscribe to