Renormalisation group on Lorentzian manifolds using (p)AQFT
Abstract
I will start the talk by discussing renormlisation group in perturbative algebraic quantum field theory (pAQFT) and its non-perturbative incarnation acting on the Buchholz-Fredenhagen dynamical C*-algebra. I will also explain how pAQFT can be used to derive functional renormlisation group (FRG) equations that generalize Wetterich equations to globally hyperbolic Lorentzian manifolds and arbitrary states (beyond the usual FRG in the vacuum).
14:15
Gravitational instantons and Hitchin moduli spaces
Abstract
Gravitational instantons are complete 4-dimensional hyperkähler manifolds with square-integrable curvature tensor. I will address the question whether all gravitational instantons (of type ALG) can be obtained as Hitchin moduli spaces. In particular, I will explain how to compute the (hyperkähler) Torelli map for (weakly) parabolic Higgs bundles on the 4-punctured sphere. This is based on recent joint work with Fredrickson, Mazzeo and Swoboda.
First-passage times and queueing behavior of stochastic search with dynamic redundancy and mortality
Abstract
Stochastic search is ubiquitous in biology and ecology, from synaptic transmission and intracellular signaling to predators seeking prey and the spread of disease. In dynamic systems like these, the number of 'searchers' is rarely constant: new agents may be recruited while others can abandon the search. Despite the ubiquity of these dynamics, their combined influence on search times remains largely unexplored. In this talk we will introduce a general framework for stochastic search in which agents progressively join and leave the process, a mechanism we term 'dynamic redundancy and mortality'. Under minimal assumptions on the underlying search dynamics, our framework yields the exact distribution of the first-passage time to a target region and further reveals surprising connections to stochastic search with stochastic resetting, wherein a single searcher is randomly 'reset' to its initial state. We will then treat the target region as a queue, which we show has interarrival times governed by a thinned nonhomogeneous Poisson process. Altogether this work provides a rigorous foundation for studying stochastic search processes with a fluctuating number of searchers. This work is in collaboration with Dr. Aanjaneya Kumar (Santa Fe Institute) and José Giral-Barajas (Imperial College London).
Scaling limits for a population model with growth, division and cross-diffusion
Abstract
PEtab SciML: The missing layer for scalable and flexible scientific machine learning modeling in biology
Abstract
Mechanistic ordinary differential equation (ODE) models are a powerful tool to study dynamic biological systems. However, their predictive power is constrained by gaps, biases, and inconsistencies in the literature. They typically also require quantitative time-lapse data for training, which is time-consuming to collect. At the same time, machine-learning approaches can capture complex patterns from data, but they are often harder to interpret and typically require large training datasets. Hybrid scientific machine learning (SciML) models offer a promising way to combine the strengths of both approaches by integrating mechanistic models with flexible data-driven modules.
Despite this promise, the use of SciML in biology remains limited by insufficient infrastructure. Dedicated software is needed because coding end-to-end differentiable workflows for gradient-based training of hybrid models is technically challenging. In addition, model exchange is hindered by the lack of a standardized, reproducible format for specifying SciML training problems, analogous to the PEtab standard for ODE models. To address these challenges, we developed PEtab-SciML, an extension of the PEtab format, and implemented support for it in the state-of-the-art modeling toolboxes PEtab.jl and AMICI. In this seminar, I will introduce the PEtab-SciML format. Using real-data examples, I will show how PEtab-SciML enables the integration of diverse data modalities into dynamic model training; such as learning the kinetic parameters of an ODE model from omics and protein sequence data. I will also show how it supports machine-learning-based black-boxing of complex model components, such as quarantine strength in an SIR model. Finally, I will show how PEtab-SciML enables the use of efficient training strategies, such as curriculum learning, that make SciML models easier to train and apply in practice.