- Compact Manifolds with Special Holonomy (2000)
- Calabi–Yau Manifolds and Related Geometries (2003)
- Riemannian Holonomy Groups and Calibrated Geometry (2007)
- A Theory of Generalized Donaldson-Thomas Invariants (2011)
- Virtual fundamental cycles in symplectic topology. Papers based on the lecture courses held at Simons Center for Geometry and Physics, 2013–2014. (2019)
