Thu, 20 Sep 2012

10:15 - 11:15
OCCAM Common Room (RI2.28)

Transport through composite membranes: Support properties, film morphology and their impact on flux, rejection and fouling

Guy Ramon
(Princeton)
Abstract

Composite membranes comprised of an ultra-thin coating film formed over a porous support membrane are the basis for state-of-the-art reverse osmosis (RO) and nanofiltration (NF) membranes, offering the possibility to independently optimize the support membrane and the coating film. However, limited information exists on transport through such composite membrane structures. Numerical calculations have been carried out in order to probe the impacts of the support membrane skin-layer pore size and porosity, support membrane bulk micro-porosity, and coating film thickness and morphology (i.e. surface roughness) on solvent and solute transport through composite membranes. Results suggest that the flux and rejection of a composite membrane may be fine-tuned, by adjusting support membrane skin layer porosity and pore size, independent of the properties of the coating film. Further, the water flux over the membrane surface is unevenly distributed, creating local ‘hot spots’ of high flux that may govern initial stages of membrane fouling and scaling. The analysis provides important insight on how the non-trivial interaction of support properties and film roughness may result in widely varying transport properties of the composite structure. In particular, the simulations reveal inherent trade-offs between flux, rejection and fouling propensity (the latter due to ‘hot spots’), which are purely consequences of geometrical factors, irrespective of materials chemistry.

Wed, 19 Sep 2012

12:00 - 13:00
Gibson 1st Floor SR

Initial-boundary value problems for systems of conservation laws: viscous approximations and limit analysis

Laura Spinolo
(IMATI-CNR Pavia)
Abstract

I will be concerned with initial-boundary value problems for systems of conservation laws in one space variable. First, I will go over some of the most relevant features of these problems. In particular, I will stress that different viscous approximation lead, in general, to different limits.

Next, I will discuss possible ways of characterizing the limit of a given viscous approximation. Also, I will establish a uniqueness criterion that allows to conclude that the limit of a self-similar approximation introduced by Dafermos et al. actually coincide with the limit of the physical viscous approximation. Finally, if time allows I will mention consequences on the design of numerical schemes. The talk will be based on joint works with S. Bianchini, C. Christoforou and S. Mishra.

Fri, 14 Sep 2012

11:30 - 13:00
OCCAM Common Room (RI2.28)

OCCAM Group Meeting

Various
Abstract
  • Alfonso Bueno - Recent advances in mathematical modelling of cardiac tissue: A fractional step forward
  • Matt Moore - Oblique water entry
  • Matt Hennessy - Mathematical problems relating to organic solar cell production
Wed, 12 Sep 2012

10:15 - 11:15
OCCAM Common Room (RI2.28)

Mono-monostatic bodies: the story of the Gömböc

Gabor Domokos
(Budapest University of Technology and Economics)
Abstract

Russian mathematician V.I.Arnold conjectured that convex, homogeneous bodies with less than four equilibria (also called mono-monostatic) may exist. Not only did his conjecture turn out to be true, the newly discovered objects show various interesting features. Our goal is to give an overview of these findings as well as to present some new results. We will point out that mono-monostatic bodies are neither flat, nor thin, they are not similar to typical objects with more equilibria and they are hard to approximate by polyhedra. Despite these "negative" traits, there seems to be strong indication that these forms appear in Nature due to their special mechanical properties.

Tue, 11 Sep 2012

10:15 - 11:15
OCCAM Common Room (RI2.28)

Universal behavior of topological defects in nematic liquid crystals

Samo Kralj
(University of Maribor)
Abstract

Topological defects (TDs) are unavoidable consequence of continuous symmetry breaking phase transitions. They exhibit several universal features and often span apparently completely different systems. Particularly convenient testing ground to study basic physics of TDs are liquid crystals (LCs) due to their softness, liquid character and optical anisotropy. In the lecture I will present our recent theoretical studies of TDs in nematic LCs, which are of interest also to other branches of physics.

 

I will first focus on coarsening dynamics of TDs following the isotropic-nematic phase transition. Among others we have tested the validity of the Kibble-Zurek [1,2] prediction on the size of the so called protodomains, which was originally derived to estimate density of TDs as a function of inflation time in the early universe. Next I will consider nematic LC shells [3]. These systems are of interest because they could pave path to mm sized scaled crystals exhibiting different symmetries. Particular attention will be paid to curvature induced unbinding of pairs of topological defects. This process might play important role in membrane fission processes.  

 

[1] W.H. Zurek, Nature 317, 505 (1985).

[2] Z. Bradac et al.,  J.Chem.Phys 135, 024506 (2011)

[3] S. Kralj et al.,  Soft Matter 7, 670 (2011); 8, 2460  (2012).

Wed, 05 Sep 2012

10:15 - 11:15
OCCAM Common Room (RI2.28)

Coagulation-fragmentation dynamics in telomeres

Richard Kollar
(Comenius University)
Abstract

Telomeres, non-coding terminal structures of DNA strands, consist of repetitive long tandem repeats of a specific length. An absence of an enzyme, telomerase, in certain cellular structures requires an alternative telomerase-independent pathway for telomeric sequence length regulation. Besides linear telomeres other configurations such as telomeric circles and telomeric loops were experimentally observed. They are suspected to play an important role in a universal mechanism for stabilization of the ends of linear DNA that possibly dates back to pre-telomerase ages. We propose a mathematical model that captures biophysical interactions of various telomeric structures on a short time scale and that is able to reproduce experimental measurements in mtDNA of yeast. Moreover, the model opens up a couple of interesting mathematical problems such as validity of a quasi-steady state approximation and dynamic properties of discrete coagulation-fragmentation systems. We also identify and estimate key factors influencing the length distribution of telomeric circles, loops and strand invasions using numerical simulations.

Wed, 29 Aug 2012

10:15 - 11:15
OCCAM Common Room (RI2.28)

Fast and accurate computation of Gauss-Jacobi quadratures

Nick Hale
Abstract

For a given positive measure on a fixed domain, Gaussian quadrature routines can be defined via their property of integrating an arbitrary polynomial of degree $2n+1$ exactly using only $n+1$ quadrature nodes. In the special case of Gauss--Jacobi quadrature, this means that $$\int_{-1}^1 (1+x)^\alpha(1-x)^\beta f(x) dx = \sum_{j=0}^{n} w_j f(x_j), \quad \alpha, \beta > -1, $$ whenever $f(x)$ is a polynomial of degree at most $2n+1$. When $f$ is not a polynomial, but a function analytic in a neighbourhood of $[-1,1]$, the above is not an equality but an approximation that converges exponentially fast as $n$ is increased.

An undergraduate mathematician taking a numerical analysis course could tell you that the nodes $x_j$ are roots of the Jacobi polynomial $P^{\alpha,\beta}_{n+1}(x)$, the degree $n+1$ polynomial orthogonal with respect to the given weight, and that the quadrature weight at each node is related to the derivative $P'^{\alpha,\beta}_{n+1}(x_j)$. However, these values are not generally known in closed form, and we must compute them numerically... but how?

Traditional approaches involve applying the recurrence relation satisfied by the orthogonal polynomials, or solving the Jacobi matrix eigenvalue problem in the algorithm of Golub and Welsch, but these methods are inherently limited by a minimal complexity of $O(n^2)$. The current state-of-the-art is the $O(n)$ algorithm developed by Glasier, Liu, and Rokhlin, which hops from root to root using a Newton iteration evaluated with a Taylor series defined by the ODE satisfied by $P^{\alpha,\beta}_{n+1}$.

We propose an alternative approach, whereby the function and derivative evaluations required in the Newton iteration are computed independently in $O(1)$ operations per point using certain well-known asymptotic expansions. We shall review these expansions, outline the new algorithm, and demonstrate improvements in both accuracy and efficiency. 

Wed, 15 Aug 2012 00:00 -
Fri, 17 Aug 2012 00:00

Research Workshop 2 on 'Duality Theory in Algebra, Logic and Computer Science'.

Abstract

Organisers: Hilary Priestley, Drew Moshier and Leo Cabrer.

This will be devoted to the applications of dualities to logic and algebra, focusing on general techniques. Thus it will seek to complement the specialised coverage in meetings devoted to, for example, modal logic, residuated structures and many-valued logics, or coalgebras. The featured topics for the Workshop will be drawn from completions of ordered structures, and applications; admissible rules, unification theory, interpolation and amalgamation; aspects of many-valued and substructural logics and ordered algebraic structures. Keynote speakers will be Leo Cabrer and Mai Gehrke.

Mon, 06 Aug 2012

17:00 - 18:00
Gibson 1st Floor SR

Continuum Surface Energy from a Lattice Model

Phoebus Rosakis
(University of Crete)
Abstract

The energy of a deformed crystal is calculated in the context of a central force lattice model in two dimensions. When the crystal shape is a lattice polygon, it is shown that the energy equals the bulk elastic energy, plus the boundary integral of a surface energy density, plus the sum over the vertices of a corner energy function. This is an exact result when the interatomic potential has finite range; for an infinite-range potential it is asymptotically valid as the lattice parameter tends to zero. The surface energy density is obtained explicitly as a function of the deformation gradient and boundary normal. The corner energy is found as an explicit function of the deformation gradient and the normals of the two facets meeting at the corner. A new bond counting approach is used, which reduces the problem to certain lattice point problems of number theory. The approach is then extended to more general convex regions with possibly curved boundary. The resulting surface energy density depends on the unit normal in a striking way. It is continuous at irrational directions, discontinuous at rational ones and nowhere differentiable. The method also yields an explicit interfacial energy for twin and phase boundaries.

Wed, 01 Aug 2012

15:00 - 16:00
Gibson 1st Floor SR

Semipositone Problems on Exterior Domains

Ratnasingham Shivaji
(University of North Carolina at Greensboro)
Abstract

\[

%\large

We study nonnegative radial solutions to the problem

\begin{equation*}

\left\{

\begin{split}

-\Delta u = \lambda K(\left|x \right|) f(u), \quad x \in \Omega

\\u = 0 \quad \qquad \quad \qquad \mbox{if } \left|x \right| = r_0

\\u \rightarrow0 \quad \qquad \quad \qquad \mbox{as } \left|x \right|\rightarrow\infty,

\end{split} \right.

\end{equation*}

where $\lambda$ is a positive parameter, $\Delta u=\mbox{div} \big(\nabla u\big)$ is the Laplacian of $u$,

$\Omega=\{x\in\ \mathbb{R}^{n}; n \textgreater 2, \left|x \right| \textgreater r_0\}$ and $K$ belongs to a class of functions such that $\lim_{r\rightarrow \infty}K(r)=0$. For classes of nonlinearities $f$ that are negative at the origin and sublinear at $\infty$ we discuss existence and uniqueness results when $\lambda$ is large.

\]

Fri, 27 Jul 2012

11:00 - 13:00
OCCAM Common Room (RI2.28)

OCCAM Group Meeting

Various
Abstract
  • James Herterich         -           Mathematical modelling of water purification
  • Paul Roberts               -           Mathematical models of retinal oxygen distribution
  • Stephen O'Keeffe       -           Mathematical modelling of growth and stability in biological structures
  • Andrey Melnik             -           Dynamics of anisotropic remodelling in elastic tissues

 

Thu, 26 Jul 2012
14:00
DH 1st floor SR

Uniqueness of the asymptotic empirical distribution of the aligned letter pairs in an optimal alignment of random sequences

Prof. Henry Matzinger
(Georgia Institute of Technology)
Abstract

We consider two independent random sequences of length n.
We consider optimal alignments according to a scoring function S.
We show that when the scoring function S is chosen at random
then with probability 1, the frequency of the aligned letter pairs
converges to a unique distribution as n goes to infinity. We also show
some concentration of measure phenomena.

Fri, 13 Jul 2012

11:30 - 13:00
OCCAM Common Room (RI2.28)

OCCAM Group Meeting

Various
Abstract
  • Yujia Chen - Solving Surface Poisson's Equation via the Closest Point Method
  • Alex Lewis - Modelling liquid crystal devices
  • Georgina Lang - Modelling of Brain Tissue Swelling
Mon, 09 Jul 2012 00:00 -
Wed, 11 Jul 2012 00:00

'Galway' Topology Symposium.

Abstract

Chief Organiser: Shari Levine.  Main speakers: Alexander Arhangel'skii, Alan Dow, Aisling McCluskey, Jan van Mill, Frank Tall, Vladimir Tkachuk

Contact for further information: @email

Fri, 15 Jun 2012

14:30 - 15:30
DH 3rd floor SR

Modelling rate limitations in dissimilatory iron reduction

Dr Henry Winstanley
(University of Limerick)
Abstract

Respiration is a redox reaction in which oxidation of a substrate (often organic) is coupled to the reduction of a terminal electron acceptor (TEA) such as oxygen. Iron oxides in various mineral forms are abundant in sediments and sedimentary rocks, and many subsurface microbes have the ability to respire using Fe(III) as the TEA in anoxic conditions. This process is environmentally important in the degradation of organic substrates and in the redox-cycling of iron. But low mineral solubility limits the bioavailability of Fe(III), which microbes access primarily through reductive dissolution. For aqueous nutrients, expressions for microbial growth and nutrient uptake rates are standardly based on Monod kinetics. We address the question of what equivalent description is appropriate when solid phase Fe(III) is the electron acceptor.

Fri, 15 Jun 2012

14:15 - 15:00
DH 1st floor SR

Asymptotic expansions for diffusions

Dr Antoine Jacquier
(Imperial College London)
Abstract

Given a diffusion in R^n, we prove a small-noise expansion for its density. Our proof relies on the Laplace method on Wiener space and stochastic Taylor expansions in the spirit of Benarous-Bismut. Our result applies (i) to small-time asymptotics and (ii) to the tails of the distribution and (iii) to small volatility of volatility.

We shall study applications of this result to stochastic volatility models, recovering the Berestycki- Busca-Florent formula (using (i)), the Gulisashvili-Stein expansion (from (ii)) and Lewis' expansions (using (iii)).

This is a joint work with J.D. Deuschel (TU Berlin), P. Friz (TU Berlin) and S. Violante (Imperial College London).

Thu, 14 Jun 2012

17:00 - 18:00
L3

Algebraic closure in pseudofinite fields

Özlem Beyarslan (Bogazici)
Abstract

A pseudofinite field is a perfect pseudo-algebraically closed (PAC) field which

has $\hat{\mathbb{Z}}$ as absolute Galois group. Pseudofinite fields exists and they can

be realised as ultraproducts of finite fields. A group $G$ is geometrically

represented in a theory $T$ if there are modles $M_0\prec M$ of $T$,

substructures $A,B$ of $M$, $B\subset acl(A)$, such that $M_0\le A\le B\le M$

and $Aut(B/A)$ is isomorphic to $G$. Let $T$ be a complete theory of

pseudofinite fields. We show that, geometric representation of a group whose order

is divisibly by $p$ in $T$ heavily depends on the presence of $p^n$'th roots of unity

in models of $T$. As a consequence of this, we show that, for almost all

completions of the theory of pseudofinite fields, over a substructure $A$, algebraic

closure agrees with definable closure, if $A$ contains the relative algebraic closure

of the prime field. This is joint work with Ehud Hrushovski.

Thu, 14 Jun 2012

16:00 - 17:00
DH 1st floor SR

From science to data to images to science with applications to astrophysics, neuroscience and physiology

Michele Piana
(Universita' di Verona Italy)
Abstract

The computational analysis of a mathematical model describing a complex system is often based on the following roadmap: first, an experiment is conceived, in which the measured data are (either directly or indirectly) related to the input data of the model equations; second, such equations are computationally solved to provide iconographic reconstructions of the unknown physical or physiological parameters of the system; third, the reconstructed images are utilized to validate the model or to inspire appropriate improvements. This talk will adopt such framework to investigate three applied problems, respectively in solar physics, neuroscience and physiology. The solar physics problem is concerned with the exploitation of hard X-ray data for the comprehension of energy transport mechanisms in solar flares. The neuroscientific problem is the one to model visual recognition in humans with the help of a magnetocencephalography experiment. Finally, the physiological problem investigates the kinetics of the kidney-bladder system by means of nuclear data.

Thu, 14 Jun 2012

14:00 - 15:00
Gibson Grd floor SR

Piecewise constant control approximation to multi-dimensional HJB equations

Dr Christoph Reisinger
(University of Oxford)
Abstract

While a general framework of approximating the solution to Hamilton-Jacobi-Bellman (HJB) equations by difference methods is well established, and efficient numerical algorithms are available for one-dimensional problems, much less is known in the multi-dimensional case. One difficulty is the monotone approximation of cross-derivatives, which guarantees convergence to the viscosity solution. We propose a scheme combining piecewise freezing of the policies in time with a suitable spatial discretisation to establish convergence for a wide class of equations, and give numerical illustrations for a diffusion equation with uncertain parameters. These equations arise, for instance, in the valuation of financial derivatives under model uncertainty.

This is joint work with Peter Forsyth.