Thu, 16 Nov 2023

14:00 - 15:00
Lecture Room 3

Finite element schemes and mesh smoothing for geometric evolution problems

Bjorn Stinner
(University of Warwick)
Abstract

Geometric evolutions can arise as simple models or fundamental building blocks in various applications with moving boundaries and time-dependent domains, such as grain boundaries in materials or deforming cell boundaries. Mesh-based methods require adaptation and smoothing, particularly in the case of strong deformations. We consider finite element schemes based on classical approaches for geometric evolution equations but augmented with the gradient of the Dirichlet energy or a variant of it, which is known to produce a tangential mesh movement beneficial for the mesh quality. We focus on the one-dimensional case, where convergence of semi-discrete schemes can be proved, and discuss two cases. For networks forming triple junctions, it is desirable to keep the impact of any additional, mesh smoothing terms on the geometric evolution as small as possible, which can be achieved with a perturbation approach. Regarding the elastic flow of curves, the Dirichlet energy can serve as a replacement of the usual penalty in terms of the length functional in that, modulo rescaling, it yields the same minimisers in the long run.

Quantifying tissue growth, shape and collision via continuum models and Bayesian inference.
Falcó, C Cohen, D Carrillo, J Baker, R Journal of the Royal Society, Interface volume 20 issue 204 20230184-20230184 (19 Jul 2023)
Energy translation symmetries and dynamics of separable autonomous
two-dimensional ODEs
Borgqvist, J Ohlsson, F Baker, R (20 Feb 2023) http://arxiv.org/abs/2302.10053v2
Travelling waves in a coarse-grained model of volume-filling cell
invasion: Simulations and comparisons
Crossley, R Maini, P Lorenzi, T Baker, R (22 Feb 2023) http://arxiv.org/abs/2302.11345v2
Mon, 12 Jun 2023

14:00 - 15:00
Lecture Room 6

Group-invariant tensor train networks for supervised learning

Nick Vannieuwenhoven
Abstract

Invariance under selected transformations has recently proven to be a powerful inductive bias in several machine learning models. One class of such models are tensor train networks. In this talk, we impose invariance relations on tensor train networks. We introduce a new numerical algorithm to construct a basis of tensors that are invariant under the action of normal matrix representations of an arbitrary discrete group. This method can be up to several orders of magnitude faster than previous approaches. The group-invariant tensors are then combined into a group-invariant tensor train network, which can be used as a supervised machine learning model. We applied this model to a protein binding classification problem, taking into account problem-specific invariances, and obtained prediction accuracy in line with state-of-the-art invariant deep learning approaches. This is joint work with Brent Sprangers.

Tue, 13 Jun 2023

15:00 - 17:00
C2

Nonlinear Fokker-Planck equations modelling large networks of neurons

Dr Pierre Roux
((Oxford University))
Further Information

Sessions led by Dr Pierre Roux will take place on

30 May 2023 10:00 - 12:00 C2

6 June 2023 15:00 - 17:00 C2

8 June 2023 10:00 - 12:00 C2

13 June 2023 15:00 - 17:00 C2

Participants should have a good knowledge of Functional Analysis; basic knowledge about PDEs and distributions; and notions in probability. Should you be interested in taking part in the course, please send an email to @email.

Abstract

PhD_course_Roux_2.pdf

We will start from the description of a particle system modelling a finite size network of interacting neurons described by their voltage. After a quick description of the non-rigorous and rigorous mean-field limit results, we will do a detailed analytical study of the associated Fokker-Planck equation, which will be the occasion to introduce in context powerful general methods like the reduction to a free boundary Stefan-like problem, the relative entropy methods, the study of finite time blowup and the numerical and theoretical exploration of periodic solutions for the delayed version of the model. I will then present some variants and related models, like nonlinear kinetic Fokker-Planck equations and continuous systems of Fokker-Planck equations coupled by convolution.

Thu, 08 Jun 2023

10:00 - 12:00
C2

Nonlinear Fokker-Planck equations modelling large networks of neurons

Dr Pierre Roux
((Oxford University))
Further Information

Sessions led by Dr Pierre Roux will take place on

30 May 2023 10:00 - 12:00 C2

6 June 2023 15:00 - 17:00 C2

8 June 2023 10:00 - 12:00 C2

13 June 2023 15:00 - 17:00 C2

Participants should have a good knowledge of Functional Analysis; basic knowledge about PDEs and distributions; and notions in probability. Should you be interested in taking part in the course, please send an email to @email.

Abstract

PhD_course_Roux_1.pdf

We will start from the description of a particle system modelling a finite size network of interacting neurons described by their voltage. After a quick description of the non-rigorous and rigorous mean-field limit results, we will do a detailed analytical study of the associated Fokker-Planck equation, which will be the occasion to introduce in context powerful general methods like the reduction to a free boundary Stefan-like problem, the relative entropy methods, the study of finite time blowup and the numerical and theoretical exploration of periodic solutions for the delayed version of the model. I will then present some variants and related models, like nonlinear kinetic Fokker-Planck equations and continuous systems of Fokker-Planck equations coupled by convolution.

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