Past Fridays@4

Aura Raulo (Ecological and Evolutionary Dynamics) and Marie-Claire Koschowitz (Vertebrate Palaeobiology) discuss their work and its mathematical challenges.

Aura Raulo

" Aura Raulo is a graduate student in Zoology Department working on transmission of symbiotic bacteria in the social networks of their animal hosts"
Title: Heaps in networks - How we share our microbiota through kisses
Abstract: Humans, like all vertebrates have a microbiome, a diverse community of symbiotic bacteria that live in and on us and are crucial for our functioning. These bacteria help us digest food, regulate our mood and function as a key part of our immune system. Intriguingly, while they are part of us, they are, unlike our other cells, in constant flux between us, challenging the traditional definition of a biological individual. Many of these bacteria need intimate social contact to be transmitted from human to human, making social network analysis tools handy in explaining their community dynamics.What then is a recipe for a ``good microbiome”? Theories and evidence implies that the most healthy and immunologically robust microbiome composition is both diverse, semi-stable and somewhat synchronized among closely interacting individuals, but little is known about what kind of transmission landscapes determine these bacterial cocktails. In my talk, I will present humanmicrobiome as a network trait: a metacommunity of cells shaped by an equilibrium of isolation and contact among their hosts. I propose that we do notnecessarily need to think of levels of life (e.g. cells, individuals, populations) as being neatly nested inside of each other. Rather, aggregations of cooperating cells (both bacteria and human cells) can be considered as mere tighter clusters in their interaction network, dynamically creating de novo defined units of life. I will present a few game theoretical evolutionary dilemmas following from this perspective and highlight outstanding questions in mapping how network position of the host translates into community composition of bacteria in flux.

Marie Koschowitz
“Marie Koschowitz is a PhD student in the Department of Zoology and the Department of Earth Sciences, working on comparative physiology and large scale evolutionary patterns in reptiles such as crocodiles, birds and dinosaurs."
Title: Putting the maths into dinosaurs – A zoologist's perspective
Abstract: Contemporary palaeontology is a subject area that often deals with sparse data.Therefore, palaeontologists became rather inventive in pursuit of getting the most out of what is available. If we find a dinosaur’s skull that shows prominent, but puzzling, bony ridges without any apparent function, how can we make meaningful interpretations of its purpose in the living animal that was? If we are confronted with a variety of partially preserved bones from animals looking anatomically similar, but not quite alike, how can we infer relationships in the absence of genetic data?Some methods that resolve these questions, such as finite element analysis, were borrowed from engineering. Others, like comparative phylogenetics or MCMC generalised mixed effects models, are even more directly based on mathematical computations. All of these approaches help us to calculate things like a raptors bite-force and understand the ins and outsof their skulls anatomy, or why pterosaurs and plesiosaurs aren’t exactly dinosaurs. This talk aims to presents a selection of current approaches to applied mathematics which have been inspired by interdisciplinary research – and to foster awareness of all the ways how mathematicians can get involved in “dinosaur research”, if they feel inclined to do so.


 

What actually happens when you submit an article to a journal? How does refereeing work in practice? How can you keep editors happy as an author or referee? How does one become a referee or editor? What does 'publication' mean with the internet and arXiv?

In this panel we'll discuss what happens between finishing writing a mathematical paper and its final (?) publication, looking at the various roles that people play and how they work best.

Featuring Helen Byrne, Rama Cont and Jonathan Pila.

 

How do you create a self-sustaining, flourishing academic community in a developing country? What kind of challenges need to be overcome to ensure that quality education becomes available? What can we do to help make it happen? In this talk, we will describe our experience visiting the University of Yangon in Myanmar. During the visit, we delivered a course to the academic staff, and discussed future collaborations between Oxford and Yangon, as well as further directions for Mathematical education in Myanmar, all the while marvelling at the wonders of the Burmese culture.

Teaching ethics to the mathematicians who need it most
For the last 20 years it has become increasingly obvious, and increasingly pressing, that mathematicians should be taught some ethical awareness so as to realise the impact of their work. This extends even to those more highly trained, like graduate students and postdocs. But which mathematicians should we be teaching this to, what should we be teaching them, and how should we do it? In this talk I’ll explore the idea that all mathematicians will, at some stage, be faced with ethical challenges stemming from their work, and yet few are ever told beforehand.
 

Thomas Prince The double life of the number 24.

The number 24 appears in a somewhat surprising result in the study of polyhedra with integer lattice points. In a different setting, the number 24 is the Euler characteristic of a K3 surface: a four (real) dimensional object which plays a central role in algebraic geometry. We will hint at why both instances of 24 are in fact the same, and suggest that integral affine geometry can be used to interpolate between the realm of integral polytopes and the world of complex algebraic geometry.

Mohit Dalwadi A multiscale mathematical model of bacterial nutrient uptake

In mathematical models that include nutrient delivery to bacteria, it is prohibitively expensive to include many small bacterial regions acting as volumetric nutrient sinks. To combat this problem, such models often impose an effective uptake instead. However, it is not immediately clear how to relate properties on the bacterial scale with this effective result. For example, one may intuitively expect the effective uptake to scale with bacterial volume for weak first-order uptake, and with bacterial surface area for strong first-order uptake. I will present a general model for bacterial nutrient uptake, and upscale the system using homogenization theory to determine how the effective uptake depends on the microscale bacterial properties. This will show us when the intuitive volume and surface area scalings are each valid, as well as the correct form of the effective uptake when neither of these scalings is appropriate.
 

Robert Timms

Title: Multiscale modelling of lithium-ion batteries

Lithium-ion batteries are one of the most widely used technologies for energy storage, with applications ranging from portable electronics to electric vehicles. Due to their popularity, there is a continued interest in the development of mathematical models of lithium-ion batteries. These models encompass various levels of complexity, which may be suitable to aid with design, or for real-time monitoring of performance. After a brief introduction to lithium-ion batteries, I will discuss some of the modelling efforts undertaken here at Oxford and within the wider battery modelling community.
 

Jan Vonk

Title: Singular moduli for real quadratic fields

At the 1900 ICM, David Hilbert posed a series of problems, of which the 12th remains completely open today. I will discuss how to solve this problem in the simplest open case, by considering certain exotic (so called p-adic) metrics on the set of numbers, and using its concomitant theories of analysis and geometry.
 

Are you teaching intercollegiate classes or tutorials this term? Would you like to explore inclusive teaching strategies that could help all students make the most of your sessions? In this interactive workshop, we'll explore strategies that have been found effective. This will be a self-contained session, but will also be a good introduction to the "Developing Learning and Teaching" course offered by MPLS for graduate students and early career researchers. The session will be led by Vicky Neale (Mathematics) and Delia O'Rourke (Oxford Learning Institute). 
 

How much do you know actually about the research that is going on across the department? The SIAM Student Chapter brings you a 3 minute thesis competition challenging a group of DPhil students to go head to head to explain their research in just 3 minutes with the aid of a single slide. This is the perfect opportunity to hear about a wide range of topics within applied mathematics, and to gain insight into the impact that mathematical research can have. The winner will be decided by a judging panel comprising Professors Helen Byrne, Jon Chapman, Patrick Farrell, and Christina Goldschmidt.
 

Cristina Palmer-Anghel: Quantum invariants via topological intersection pairings
The world of quantum invariants for knots started in 1984 with the discovery of a strong link invariant, namely the Jones polynomial. Then, Reshetikhin and Turaev developed a conceptual algebraic method that, starting with any quantum group, produces invariants for knots. The question that we have in mind is to find topological models for certain types of quantum invariants. On the topological side, in 2000, Bigelow, building on earlier work of Lawrence,
interpreted the original Jones polynomial in a homological manner- as a graded intersection pairing in a covering of a configuration space of the punctured disc. On the quantum side of the story, the coloured Jones polynomials are a sequence of quantum invariants constructed through the Reshetikhin-Turaev recipe from the quantum group Uq(sl(2)). The first invariant of this sequence is the original Jones polynomial. In this talk we will present how one can use topological intersection pairings in order to describe a topological model for all coloured Jones polynomials.

Francis Woodhouse: Autonomous mechanisms inspired by biology

Unlike the air around us, biological systems are not in equilibrium: cells consume chemical energy to keep growing and moving, forming a clear arrow of time. The recent creation of artificial versions of these ‘active’ materials suggests that these concepts can be harnessed to power new soft robotic systems fuelled by as simple a source as oxygen. After an introduction to the physics of natural and artificial active systems, we will see how endowing a mechanical network with activity can create an intricate self-actuating mechanism.

In this session we discuss various different routes for promoting your research through a panel discussion with Dawn Gordon (Project Manager, Oxford University Innovation), Dyrol Lumbard (External Relations Manager, Mathematical Institute), James Maynard (Academic Faculty, Mathematical Institute) and Ian Griffiths, and chaired by Frances Kirwan. The panel discussion will include the topics of outreach, impact, and strategies for promoting aspects of mathematics that are less amenable to public engagement. 

Claudia Scheimbauer

Title: Quantum field theory meets higher categories

Abstract: Studying physics has always been a driving force in the development of many beautiful pieces of mathematics in many different areas. In the last century, quantum field theory has been a central such force and there have been several fundamentally different approaches using and developing vastly different mathematical tools. One of them, Atiyah and Segal's axiomatic approach to topological and conformal quantum field theories, provides a beautiful link between the geometry of "spacetimes” (mathematically described as cobordisms) and algebraic structures. Combining this approach with the physical notion of "locality" led to the introduction of the language of higher categories into the topic. The Cobordism Hypothesis classifies "fully local" topological field theories and gives us a recipe to construct examples thereof by checking certain algebraic conditions generalizing the existence of the dual of a vector space. I will give an introduction to the topic and very briefly mention on my own work on these "extended" topological field theories.

Alberto Paganini

Title: Shape Optimization with Finite Elements

Abstract: Shape optimization means looking for a domain that minimizes a target cost functional. Such problems are commonly solved iteratively by constructing a minimizing sequence of domains. Often, the target cost functional depends on the solution to a boundary value problem stated on the domain to be optimized. This introduces the difficulty of solving a boundary value problem on a domain that changes at each iteration. I will suggest how to address this issue using finite elements and conclude with an application from optics.

Research suggests that students with a 'growth mindset' may do better than those with a 'fixed mindset'.

• What does that mean for our teaching?
• How can we support students to develop a growth mindset?
• What sorts of mindsets do we ourselves have?
• And how does that affect our teaching and indeed the rest of our work?

Jan Sbierski

Title: On the unique evolution of solutions to wave equations

Abstract: An important aspect of any physical theory is the ability to predict the future of a system in terms of an initial configuration. This talk focuses on wave equations, which underlie many physical theories. We first present an example of a quasilinear wave equation for which unique predictability in fact fails and then turn to conditions which guarantee predictability. The talk is based on joint work with Felicity Eperon and Harvey Reall.

Andrew Krause

Title: Surprising Dynamics due to Spatial Heterogeneity in Reaction-Diffusion Systems

Abstract: Since Turing's original work, Reaction-Diffusion systems have been used to understand patterning processes during the development of a variety of organisms, as well as emergent patterns in other situations (e.g. chemical oscillators). Motivated by understanding hair follicle formation in the developing mouse, we explore the use of spatial heterogeneity as a form of developmental tuning of a Turing pattern to match experimental observations of size and wavelength modulation in embryonic hair placodes. While spatial heterogeneity was nascent in Turing's original work, much work remains to understand its effects in Reaction-Diffusion processes. We demonstrate novel effects due to heterogeneity in two-component Reaction-Diffusion systems and explore how this affects typical spatial and temporal patterning. We find a novel instability which gives rise to periodic creation, translation, and destruction of spikes in several classical reaction-diffusion systems and demonstrate that this periodic spatiotemporal behaviour appears robustly away from Hopf regimes or other oscillatory instabilities. We provide some evidence for the universal nature of this phenomenon and use it as an exemplar of the mostly unexplored territory of explicit heterogeneity in pattern formation.
 

Speaker: Radu Cimpeanu
Title: Crash testing mathematical models in fluid dynamics

Abstract: In the past decades, the broad area of multi-fluid flows (systems in which at least two fluids, be they liquids or mixtures of liquid and gas, co-exist) has benefited from simultaneous innovations in experimental equipment, concentrated efforts on analytical approaches, as well as the rise of high performance computing tools. This provides a wonderful wealth of techniques to approach a given challenge, however it also introduces questions as to which path(s) to take. In this talk I will explore the symbiotic relationship between reduced order modelling and fully nonlinear direct computations, each of their strengths and weaknesses and ultimately how to use a hybrid strategy in order to gain an understanding over larger subsets of often vast solution spaces. The discussion will take us through a number of interesting topics in fluid mechanics on a wide range of scales, from electrohydrodynamic control in microfluidics, to nonlinear waves in channel flows and violent drop impact scenarios.

Speaker: Liana Yepremyan
Title: Turan-type problems for hypergraphs

Abstract: One of the earliest results in extremal graph theory is Mantel's Theorem  from 1907, which says that for given number of vertices, the largest triangle-free graph on these vertices is the complete bipartite graph with (almost) equal sizes. Turan's Theorem from 1941 generalizes this result to all complete graphs. In general, the Tur'\an number of a graph G (or more generally, of  a hypergraph) is the largest number of edges in a graph (hypergraph) on given number of vertices containing no copy of G as a subgraph. For graphs a lot is known about these numbers,  a result by Erd\Hos, Stone and Simonovits determines the correct order of magnitude of Tur\'an numbers  for all non-bipartite graphs. However, these numbers are known only for few  hypergraphs. We don't even know what is the Tur\'an number of the complete 3-uniform hypergraph on 4 vertices. In this talk I will give some  introduction  to these problems and brielfly describe some of the methods used, such as the stability method and the Lagrangian  function, which are interesting on their own.
 

Who are you? What motivates you? What's important to you? How do you react to challenges and adversities? In this session we will explore the power of self-awareness (understanding our own characters, values and motivations) and introduce assertiveness skills in the context of building positive and productive relationships with colleagues, collaborators, students and others.
 

Yaolong Cao: Gauge Theories on Geometric Spaces
In this talk, I will very briefly discuss gauge theories on various geometric spaces, including Riemann surfaces, 4-manifolds and manifolds with special or exceptional holonomy. More details on Calabi-Yau 4-folds will be mentioned, which are related to my research interests.

Doireann O'Kiely: Dynamic Wrinkling of Elastic Sheets
Our lives contain many scenarios in which thin structures wrinkle: a piece of tin foil or cling film crumples in our hand, and creases form in our skin as we age. In this talk I will discuss experimental and theoretical work by researchers in the Mathematical Institute on wrinkling of elastic sheets.
We study the impact of a solid onto an elastic sheet floating at a liquid-air interface. We observe a wave that is reminiscent of the ripples caused by dropping a stone in a pond, as well as spoke-like wrinkles, whose wavelength evolves in time. We describe these phenomena using a combination of asymptotic analysis, numerical simulations and scaling arguments.
 

In this talk I will discuss the upcoming REF2021 and its significance for early career researchers (research fellows and postdocs) including

• why it is so important to all UK maths departments
• why the timing of it could have important career consequences for ECRs
• publication issues such as quality versus quantity, and choice of journal
• the importance of Impact Case Studies