The impact of experimental design choices on parameter inference for models of growing cell colonies
Parker, A Simpson, M Baker, R (2017)
Mechanical cell competition in heterogeneous epithelial tissues
Murphy, R Buenzli, P Baker, R Simpson, M (2019)
The role of mechanical interactions in EMT
Murphy, R Buenzli, P Tambyah, T Thompson, E Hugo, H Baker, R Simpson, M
Distribution Regression for Sequential Data
Lemercier, M Salvi, C Damonlas, T Bonilla, E Lyons, T 24TH INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE AND STATISTICS (AISTATS) volume 130 3754-3762 (01 Jan 2021)
SigGPDE: Scaling Sparse Gaussian Processes on Sequential Data
Lemercier, M Salvi, C Cass, T Bonilla, E Damonlas, T Lyons, T INTERNATIONAL CONFERENCE ON MACHINE LEARNING, VOL 139 volume 139 (01 Jan 2021)
Fri, 10 Jun 2022

16:00 - 17:00
L2

Maths Meets Stats

Melanie Weber and Francesca Panero
Abstract

Melanie Weber 

Title: Geometric Methods for Machine Learning and Optimization

Abstract: A key challenge in machine learning and optimization is the identification of geometric structure in high-dimensional data. Such structural understanding is of great value for the design of efficient algorithms and for developing fundamental guarantees for their performance. Motivated by the observation that many applications involve non-Euclidean data, such as graphs, strings, or matrices, we discuss how Riemannian geometry can be exploited in Machine Learning and Optimization. First, we consider the task of learning a classifier in hyperbolic space. Such spaces have received a surge of interest for representing large-scale, hierarchical data, since they achieve better representation accuracy with fewer dimensions. Secondly, we consider the problem of optimizing a function on a Riemannian manifold. Specifically, we will consider classes of optimization problems where exploiting Riemannian geometry can deliver algorithms that are computationally superior to standard (Euclidean) approaches.

 

Francesca Panero

Title: A general overview of the different projects explored during my DPhil in Statistics.

Abstract: In the first half of the talk, I will present my work on statistical models for complex networks. I will propose a model to describe sparse spatial random graph underpinned by the Bayesian nonparametric theory and asymptotic properties of a more general class of these models, regarding sparsity, degree distribution and clustering coefficients.

The second half will be devoted to the statistical quantification of the risk of disclosure, a quantity used to evaluate the level of privacy that can be achieved by publishing a microdata file without modifications. I propose two ways to estimate the risk of disclosure, using both frequentist and Bayes nonparametric statistics.

 

Fri, 13 May 2022

16:00 - 17:00
L2

Mental health and wellbeing

Rebecca Reed (Siendo)
Abstract

*Note the different room location (L2) to usual Fridays@4 sessions*

This week is Mental Health Awareness Week. To mark this, Rebecca Reed from Siendo will deliver a session on mental health and wellbeing. The session will cover the following things: 

- The importance of finding a balance with achievement and managing stress and pressure.
- Coping mechanisms work with stresses at work in a positive way (not seeing all stress as bad).
- The difficulties faced in the HE environment, such as the uncertainty felt within jobs and research, combined with the high expectations and workload. 

 

Fri, 29 Apr 2022

16:00 - 17:00
L1

North Meets South

Akshat Mugdal and Renee Hoekzema
Abstract
Speaker: Akshat Mugdal
 
Title: Fantastic arithmetic structures and where to find them
 
Abstract: This talk will be a gentle introduction to additive combinatorics, an area lying somewhat at the intersection of combinatorics, number theory and harmonic analysis, which concerns itself with identification and classification of sets with additive structure. In this talk, I will outline various notions of when a finite set of integers may be considered to be additively structured and how these different notions interconnect with each other, with various examples sprinkled throughout. I will provide some further applications and open problems surrounding this circle of ideas, including a quick study of sets that exhibit multiplicative structure and their interactions with the aforementioned notions of additivity.
 
 
Speaker: Renee Hoekzema 

Title: Exploring the space of genes in single cell transcriptomics datasets

Abstract: Single cell transcriptomics is a revolutionary technique in biology that allows for the measurement of gene expression levels across the genome for many individual cells simultaneously. Analysis of these vast datasets reveals variations in expression patterns between cells that were previously out of reach. On top of discrete clustering into cell types, continuous patterns of variation become visible, which are associated to differentiation pathways, cell cycle, response to treatment, adaptive heterogeneity or what just whatever the cells are doing at that moment. Current methods for assigning biological meaning to single cell experiments relies on predefining groups of cells and computing what genes are differentially expressed between them. The complexity found in modern single cell transcriptomics datasets calls for more intricate methods to biologically interpret both discrete clusters as well as continuous variations. We propose topologically-inspired data analysis methods that identify coherent gene expression patterns on multiple scales in the dataset. The multiscale methods consider discrete and continuous transcriptional patterns on equal footing based on the mathematics of spectral graph theory. As well as selecting important genes, the methodology allows one to visualise and explore the space of gene expression patterns in the dataset.

Trajectory growth lower bounds for random sparse deep ReLU networks
Price, I Tanner, J volume 00 1004-1009 (16 Dec 2021)
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