Evolutionary Dynamics in a Simple Model of Self-Assembly
 Johnston, I Ahnert, S Doye, J Louis, A (28 Feb 2011) doi:10.48550/arxiv.1102.5694
Formation of dodecagonal quasicrystals in two-dimensional systems of patchy particles
 van der Linden, M Doye, J Louis, A (24 Nov 2011) doi:10.48550/arxiv.1111.5782
The effect of topology on the structure and free energy landscape of DNA kissing complexes
 Romano, F Hudson, A Doye, J Ouldridge, T Louis, A (15 Mar 2012) doi:10.48550/arxiv.1203.3577
Sequence-dependent thermodynamics of a coarse-grained DNA model
 Šulc, P Romano, F Ouldridge, T Rovigatti, L Doye, J Louis, A (14 Jul 2012) doi:10.48550/arxiv.1207.3391
Coarse-grained simulations of DNA overstretching
 Romano, F Chakraborty, D Doye, J Ouldridge, T Louis, A (26 Sep 2012) doi:10.48550/arxiv.1209.5892
Simulating a burnt-bridges DNA motor with a coarse-grained DNA model
 Šulc, P Ouldridge, T Romano, F Doye, J Louis, A (18 Dec 2012) doi:10.48550/arxiv.1212.4536
Coarse-graining DNA for simulations of DNA nanotechnology
 Doye, J Ouldridge, T Louis, A Romano, F Sulc, P Matek, C Snodin, B Rovigatti, L Schreck, J Harrison, R Smith, W (18 Aug 2013) doi:10.48550/arxiv.1308.3843
DNA hybridization kinetics: zippering, internal displacement and sequence dependence
 Ouldridge, T Šulc, P Romano, F Doye, J Louis, A (14 Mar 2013) doi:10.48550/arxiv.1303.3370
The role of loop stacking in the dynamics of DNA hairpin formation
 Mosayebi, M Romano, F Ouldridge, T Louis, A Doye, J (05 Oct 2014) doi:10.48550/arxiv.1410.1218
Modelling toehold-mediated RNA strand displacement
 Šulc, P Ouldridge, T Romano, F Doye, J Louis, A (12 Nov 2014) doi:10.48550/arxiv.1411.3239
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